Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq7 217 2e-51
seq5 125 9e-24
>seq7
Length=24649197
Score = 217 bits (240), Expect = 2e-51
Identities = 608/918 (66%), Gaps = 25/918 (3%)
Strand=Plus/Plus
Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428
||| || || ||||| || | || || ||||| ||||||||||||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488
|||||| |||| || ||||| | ||| ||| | || | | || | ||| |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548
|| ||||| || ||||| || || || |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608
| ||||| || | || ||| ||| ||||| ||||| || | ||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 32609 AGATCTTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667
||| | | ||||||| | | | | | | || | || | |||||||| ||||
Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAA-GACTATAGATCAAACAAGCGA 21840358
Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727
|||| ||||| ||||| |||||||| ||| |||||||| || || |||||||| ||||
Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418
Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 32786
||| || || || || | ||| ||||| || |||| | | ||||| ||||| || |||
Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACCT 21840477
Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--ATCCA 32842
|| || ||||| || | | |||||| | | || || || || |||||
Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGATCCA 21840533
Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902
|| |||||| || || || || | |||||||| || || || || || ||||||
Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593
Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962
|| | | | || || | ||||| | || || || | | ||||||||||| || ||
Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653
Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022
|||||| || || || || ||||| |||||||||||| | ||| || | ||||| ||
Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713
Query 33023 TTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081
|| | ||| ||||| | | ||| || || |||||||| || ||||| |
Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772
Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAGTTTATTCCAATC- 33136
| || | || ||||| || || | |||||| ||| || ||||| | ||| ||
Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831
Query 33137 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194
|||| |||| ||| | ||| |||||||| | ||||| || || || || || ||
Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888
Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254
|| ||||| | |||||| | | ||||| ||||| || ||| |||| || ||| ||
Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948
Query 33255 TTTGCAAGGATTGGTTCC 33272
|| ||||||||||||
Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966
Score = 82.4 bits (90), Expect = 1e-10
Identities = 90/117 (77%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617
|| ||||| || ||||| | ||||| ||||||||||||||||| ||||||| | | ||
Sbjct 507856 AGGATAAATGCATCTGCAAGACCTTGTACACCAATACCGATAGGCCTATGTCGCATGTTT 507797
Query 62618 GAGATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673
||| ||| || ||| | | ||||||| ||| | ||||||||| || || |||||
Sbjct 507796 GAGGTTTTTGCAGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 507741
>seq5
Length=21221946
Score = 125 bits (138), Expect = 9e-24
Identities = 277/407 (68%), Gaps = 9/407 (2%)
Strand=Plus/Plus
Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969
| || || ||||||| | ||| ||||| | | ||||||||||| ||||| || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 32970 TTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028
|||||||| || || || || |||||| ||||| | ||||| | | || || || |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTTGAACATC-GG 3397607
Query 33029 ACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087
||| ||||| || | ||| || || ||||||||| || || || || || |
Sbjct 3397608 ACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGA 3397667
Query 33088 ATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATA 33143
|||||||| || || | || |||| | | | | |||| | ||| || | |
Sbjct 3397668 GGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTG 3397726
Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203
|| | |||| ||| |||||||| | ||||| || ||||| || || ||||| |||||
Sbjct 3397727 TCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATT 3397786
Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250
| |||||| | | || |||||||| || ||| ||||| | |||
Sbjct 3397787 TCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833
Score = 102 bits (112), Expect = 1e-16
Identities = 281/426 (66%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428
||| || || ||||| |||||||| || |||||||||||||| |||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488
|||||| |||| || ||||| |||||| || | || | || | || |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 32547
| ||||| || ||||| || ||||| |||||| |||| ||||| || | ||
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607
|| ||||| || | | ||| ||| || || ||||||||| | |
Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994
Query 32608 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 32665
| || | || ||||||||| | | | | | || ||| || | | | || ||
Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052
Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725
||||||||||||||| || ||||| | || |||||||||||||| || ||||| ||
Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112
Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785
||| || || || || || ||||| || || || ||| ||| || ||||| || ||
Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172
Query 32786 TTCTAC 32791
||| ||
Sbjct 3397173 TTCAAC 3397178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633626487401600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |