Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 217 2e-51 seq5 125 9e-24 >seq7 Length=24649197 Score = 217 bits (240), Expect = 2e-51 Identities = 608/918 (66%), Gaps = 25/918 (3%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| || | || || ||||| ||||||||||||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || ||||| | ||| ||| | || | | || | ||| | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || ||||| || ||||| || || || |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | ||||| || | || ||| ||| ||||| ||||| || | || Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 32609 AGATCTTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 ||| | | ||||||| | | | | | | || | || | |||||||| |||| Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAA-GACTATAGATCAAACAAGCGA 21840358 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 |||| ||||| ||||| |||||||| ||| |||||||| || || |||||||| |||| Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 32786 ||| || || || || | ||| ||||| || |||| | | ||||| ||||| || ||| Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACCT 21840477 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--ATCCA 32842 || || ||||| || | | |||||| | | || || || || ||||| Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGATCCA 21840533 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || |||||| || || || || | |||||||| || || || || || |||||| Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 || | | | || || | ||||| | || || || | | ||||||||||| || || Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 |||||| || || || || ||||| |||||||||||| | ||| || | ||||| || Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713 Query 33023 TTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 || | ||| ||||| | | ||| || || |||||||| || ||||| | Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAGTTTATTCCAATC- 33136 | || | || ||||| || || | |||||| ||| || ||||| | ||| || Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831 Query 33137 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 |||| |||| ||| | ||| |||||||| | ||||| || || || || || || Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 || ||||| | |||||| | | ||||| ||||| || ||| |||| || ||| || Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948 Query 33255 TTTGCAAGGATTGGTTCC 33272 || |||||||||||| Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966 Score = 82.4 bits (90), Expect = 1e-10 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || ||||| || ||||| | ||||| ||||||||||||||||| ||||||| | | || Sbjct 507856 AGGATAAATGCATCTGCAAGACCTTGTACACCAATACCGATAGGCCTATGTCGCATGTTT 507797 Query 62618 GAGATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||| ||| || ||| | | ||||||| ||| | ||||||||| || || ||||| Sbjct 507796 GAGGTTTTTGCAGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 507741 >seq5 Length=21221946 Score = 125 bits (138), Expect = 9e-24 Identities = 277/407 (68%), Gaps = 9/407 (2%) Strand=Plus/Plus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 ||||| | || ||||| || ||||| || || || || ||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 | || || ||||||| | ||| ||||| | | ||||||||||| ||||| || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 |||||||| || || || || |||||| ||||| | ||||| | | || || || | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTTGAACATC-GG 3397607 Query 33029 ACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 ||| ||||| || | ||| || || ||||||||| || || || || || | Sbjct 3397608 ACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGA 3397667 Query 33088 ATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATA 33143 |||||||| || || | || |||| | | | | |||| | ||| || | | Sbjct 3397668 GGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTG 3397726 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 || | |||| ||| |||||||| | ||||| || ||||| || || ||||| ||||| Sbjct 3397727 TCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATT 3397786 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | |||||| | | || |||||||| || ||| ||||| | ||| Sbjct 3397787 TCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833 Score = 102 bits (112), Expect = 1e-16 Identities = 281/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| |||||||| || |||||||||||||| |||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || ||||| |||||| || | || | || | || | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 32547 | ||||| || ||||| || ||||| |||||| |||| ||||| || | || Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 || ||||| || | | ||| ||| || || ||||||||| | | Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994 Query 32608 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 32665 | || | || ||||||||| | | | | | || ||| || | | | || || Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||||||||||||| || ||||| | || |||||||||||||| || ||||| || Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| || || || || || ||||| || || || ||| ||| || ||||| || || Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172 Query 32786 TTCTAC 32791 ||| || Sbjct 3397173 TTCAAC 3397178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626487401600