Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 250 3e-61 seq5 138 1e-27 seq6 93.3 5e-14 seq1 91.5 2e-13 seq8 84.2 2e-11 seq4 84.2 2e-11 >seq7 Length=24649197 Score = 250 bits (276), Expect = 3e-61 Identities = 536/781 (69%), Gaps = 34/781 (4%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 |||||| |||||||| ||||| || ||||||||| |||||| |||| |||||| || | Sbjct 21840177 CAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAAC 21840236 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | | | ||| || || || ||| | || ||| |||| || |||| || || || Sbjct 21840237 CA-AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCA--CA 21840293 Query 93036 AGATTTCTATTAC------TCTACTATTTGG--TGGTTTTTGTACGACATAATTGTACAT 93087 | | || ||| | ||| | || | | ||| | | ||| | || || Sbjct 21840294 AACTATCGATTTCAAACGTTCTTC-ATCAAGCTTAGTTCTAAGAAGAC-----TATAGAT 21840347 Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 || || || || || || | ||||||||||| || ||||| || || |||||| Sbjct 21840348 CAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGT 21840407 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | ||||||||||| | ||| ||||| ||| ||| |||||||| || Sbjct 21840408 GAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAA 21840467 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTTGCGGAATTAC 93266 ||||||||||| ||| ||||| || || || | || || || |||| | || | Sbjct 21840468 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG--AT--C 21840523 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 | |||||||||| | |||||| || ||||||||| | | |||||| | |||||||| | Sbjct 21840524 CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTG 21840583 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 || ||| || | ||||| ||| | ||| ||||| || |||| | ||| || Sbjct 21840584 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 21840643 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 |||| |||||||| | |||||| || || ||||||||||||||||| | |||||| | Sbjct 21840644 ACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 21840703 Query 93447 TGATCTGCACTTCTTGAGA-AAATC-TCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 |||||| || || || | |||| || | |||||| || || || || || || Sbjct 21840704 AGATCTGAACATC-GGACATGAATCGGGTCGA-GAGATTCTCCAGAACGATTCCGTCTGA 21840761 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTT 93561 ||| ||||| || || | | || || || || || || || | || || Sbjct 21840762 TGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTT 21840821 Query 93562 ATCCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| ||| ||| | |||| || ||||||||||||||| | ||||| || || |||| Sbjct 21840822 TTCCCAGTCGCGATTG-TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTT 21840880 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGA 93679 | ||||| |||||||| ||||| || | | | ||||| ||||| || || ||| || ||| Sbjct 21840881 CGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT-ACAGAATCGA 21840939 Query 93680 T 93680 | Sbjct 21840940 T 21840940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7976932 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7976875 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||||||| || || Sbjct 7976874 GCGTGGGTTCAAATCCCACTTCTGACAAATTGTTTTT 7976838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 21421614 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 21421557 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| |||||||| |||||| || Sbjct 21421556 GCGTGGGTTCAAACCCCACTTCTGACATAT 21421527 >seq5 Length=21221946 Score = 138 bits (152), Expect = 1e-27 Identities = 315/466 (68%), Gaps = 10/466 (2%) Strand=Plus/Plus Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || |||||||| ||| || || || | || |||||||| ||| || || | | Sbjct 3397358 AACATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTTTGAGA--TCCAT 3397415 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||||||| | ||||| | ||||| ||| | ||||| | ||||| || || Sbjct 3397416 C-GATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCA 3397474 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 ||| || | ||||| ||| | |||| || || ||||||| | ||| |||| Sbjct 3397475 CGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATAC 3397534 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || || || |||| ||| || || || || ||||| ||||||||| | || |||| | Sbjct 3397535 ATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAG 3397594 Query 93449 ATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | || || || || | |||| ||||||| || || || || || ||||| Sbjct 3397595 ACTTGAACATCG-GACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGC 3397653 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT---C 93564 || || ||||| | | ||| || || || || ||| | || || || || | | Sbjct 3397654 GGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTC 3397713 Query 93565 CCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| | | | || | ||| ||||| |||||||| | ||||| || |||||||| | Sbjct 3397714 CCAGTCGCGGTTG-TCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGG 3397772 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||||||||| ||||| || | | | || |||||||| || || Sbjct 3397773 CTTTTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACAT 3397818 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/304 (68%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || || |||||| ||||||||||| ||||| || | | ||| Sbjct 3396880 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 3396938 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || || ||| |||||||| | || || || | |||| Sbjct 3396939 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGATTGA 3396998 Query 93043 TATTAC----TCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 | || ||| | | | | ||||| || | |||| | | ||| || | Sbjct 3396999 CTTCACGCGTTCTTCACTAAGCTTCGTTTTGA--GAAGTG--TGTAGAGAAGGCAAGCGA 3397054 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | ||| |||| |||||||| ||||| ||||| || ||| ||||||| || || | Sbjct 3397055 AATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCA 3397114 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 |||||||||||||| ||||| || |||||| ||| || || || || || ||||||| Sbjct 3397115 TGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTT 3397174 Query 93219 CCAC 93222 | || Sbjct 3397175 CAAC 3397178 >seq6 Length=25113588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 |||||| ||||||||||||||||||||||||| ||||| |||||| | || || | || Sbjct 20864829 AGTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 20864770 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||| |||||||| |||||| |||| Sbjct 20864769 GTGGGTTCAAACCCCACTGCTGACACAATT 20864740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||||||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2964585 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2964642 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || |||||| |||||| Sbjct 2964643 GCGTGGGTTCAAATCCCACATCTGACA 2964669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2269587 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2269530 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| | ||||||| Sbjct 2269529 GGGTTCAAATCCCACAGCTGTC-AATTATT 2269501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 7/88 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 20865008 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 20864951 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 20864950 GCGTGGGTTC-AACCCCACTTCTGACAA 20864924 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 11494450 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 11494507 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT-TGGAAttttt 126366 |||||||||| || ||||| |||||| | ||| | | ||||||| Sbjct 11494508 GCGTGGGTTCAAATCCCACTTCTGACATTTCATTTTATTAAATTTTT 11494554 >seq1 Length=33132539 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 14104411 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 14104468 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| ||||||| || Sbjct 14104469 GCGTGGGTTCAAACCCCACTTCTGAC-AATTATTTTT 14104504 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 4619159 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 4619216 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 4619217 GGGTTCAAATCCCACAGCTGTCAA 4619240 >seq8 Length=22951293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1059587 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1059530 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 1059529 TTCAAATCCCACAGCTGTCAATTTTTTTTT 1059500 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 15160589 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 15160532 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15160531 GCGTGGGTTCAAATCCCACTTCTGACA 15160505 >seq4 Length=23328337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||||| ||| ||||| ||| | | || Sbjct 16620623 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTCAAGTTCTGGTCTTCGTAAGAGGGC 16620682 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 16620683 GTGGGTTCAAATCCCACTTCTGACA 16620707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855955311040