Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq7 102 6e-17 seq2 98.7 7e-16 seq4 95.1 9e-15 >seq6 Length=25113588 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||| |||||||| | || || | | Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| || || || || | ||| || |||| Sbjct 10621922 GACACCATTGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCAG 10621981 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||| || || ||||| ||||||||| ||| ||||||||||||| Sbjct 10621982 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAAC 10622041 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| ||||| || |||| | |||||| |||| || Sbjct 10622042 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 10622088 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| |||| |||||| | |||||||| || |||||||| ||| Sbjct 22758702 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGATTGATCTTTGCCGGGAAACAACTTGAA 22758643 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| |||| || ||||| ||||||||||| ||||| ||||| |||| || Sbjct 22758642 GATGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCACTTGGTGTTG 22758583 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 22758582 CGTCTCCGTGGAGG 22758569 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| |||| ||||| | ||||| || || || ||||| ||| Sbjct 22900758 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 22900817 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 || | |||| |||| || ||||| ||||||||||| ||||| |||||| |||| ||| Sbjct 22900818 GACGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 22900877 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 22900878 CGTCTGCGTGGAGG 22900891 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| |||| ||||| | ||||| || || || ||||| ||| Sbjct 23404056 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 23404115 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| |||| |||||||| ||||||||||| ||||| ||||| |||| || Sbjct 23404116 GATGGCAGAACTTTGGCTGATTACAACATTCAGAAGGAGTCTACACTTCACTTGGTCTTG 23404175 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 23404176 CGTCTGCGTGGAGG 23404189 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||| ||||| || | || || | | Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| || || || || | ||| |||| Sbjct 906042 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 905983 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || ||||| ||||||||| || || ||||||||||| Sbjct 905982 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACAAT 905923 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || || |||| | |||||| |||| || Sbjct 905922 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTAAGAGGTGG 905876 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || ||||| |||| || | || Sbjct 10622774 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACTTTGGAGGTTGAGAGCTCA 10622833 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| || ||| || || || || || ||| ||||| Sbjct 10622834 GACACGATTGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGGGTCCCTCCGGACCAA 10622893 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| || | || |||||||| Sbjct 10622894 CAGAGACTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGGACACTTGCAGATTACAAC 10622953 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || ||||||||| |||| | ||| | || || ||| Sbjct 10622954 ATCCAGAAGGAGTCGACTCTTCATTTGGTTCTTCGTCTTCGTGGTGGA 10623001 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||| ||||| ||||| || |||| ||| | || Sbjct 905418 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCATAACTTTGGAGGTGGAGAGCTCA 905359 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || || || | || | ||||| Sbjct 905358 GACACAATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 905299 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| ||||| || || ||| ||| | || |||||||| Sbjct 905298 CAGAGGCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAAC 905239 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| ||||| | || || ||| | || || || Sbjct 905238 ATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCGTCTGCGTGGTGG 905192 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||||||||| |||| || || Sbjct 10622546 ATGCAAATCTTTGTGAAGACCCTTACCGGAAAAACCATTACTTTGGAGGTTGAGAGTTCA 10622605 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || ||||| || | || | | || Sbjct 10622606 GACACAATCGATAATGTCAAGGCCAAAATTCAGGACAAAGAAGGGATCCCACCAGATCAG 10622665 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| ||| | || ||||||||| Sbjct 10622666 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTCTTGCGGATTACAAT 10622725 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || ||||| | || || ||| | || || || Sbjct 10622726 ATTCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTTCGTGGTGG 10622772 >seq7 Length=24649197 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || |||| |||||||||| | ||| || | || Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| ||||| || | | |||| |||| Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCAG 18994007 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| |||||||| ||||| || ||| ||| | || |||||||| Sbjct 18994006 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAAC 18993947 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| ||||| ||||| ||| |||| Sbjct 18993946 ATCCAGAAAGAATCAACTCTCCATTTGGT 18993918 >seq2 Length=19320864 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | |||||| | || ||||| |||||||| | || || | | Sbjct 9127156 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9127097 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| ||||| || ||| | ||| |||| Sbjct 9127096 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9127037 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| ||||| ||||| |||||||| || |||| ||||||||| Sbjct 9127036 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9126977 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || || ||| |||| | | ||| |||| || Sbjct 9126976 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9126930 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | |||||| | || ||||| |||||||| | || || | | Sbjct 9215937 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9215878 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| ||||| || ||| | ||| |||| Sbjct 9215877 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9215818 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| ||||| ||||| |||||||| || |||| ||||||||| Sbjct 9215817 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9215758 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || || ||| |||| | | ||| |||| || Sbjct 9215757 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9215711 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||||||||| ||||| || || ||| | ||| |||| |||| Sbjct 9214910 ACCAACAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGACGGACTTTGGCTGATT 9214851 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 |||| || |||||||||||||| ||||| Sbjct 9214850 ACAACATCCAGAAGGAATCTACCCTTCA 9214823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||| ||||| ||||| || || ||| ||| |||| |||| Sbjct 9126129 ACCAACAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATT 9126070 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || |||||||||||||| ||||| | || || ||| | || || || Sbjct 9126069 ACAACATCCAGAAGGAATCTACCCTTCACCTTGTGTTGCGTCTTCGTGGTGG 9126018 >seq4 Length=23328337 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||| ||||| || | || || | | Sbjct 15772023 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 15771964 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| || || || || | ||| |||| Sbjct 15771963 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 15771904 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || ||||| ||||||||| || |||||||||||||| Sbjct 15771903 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGCCGATTACAAT 15771844 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || || |||| | |||||| |||| || Sbjct 15771843 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTAAGAGGTGG 15771797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||| ||||| ||||| || |||| ||| | || Sbjct 15771339 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCATAACTTTGGAGGTGGAGAGCTCA 15771280 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || || || | || | ||||| Sbjct 15771279 GACACAATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 15771220 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| ||||| || || ||| ||| | || |||||||| Sbjct 15771219 CAGAGGCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAAC 15771160 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| ||||| | || || ||| | || || || Sbjct 15771159 ATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCGTCTGCGTGGTGG 15771113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121762206384