Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 102 2e-16 >seq7 Length=24649197 Score = 102 bits (112), Expect = 2e-16 Identities = 352/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||||||||| || | || || Sbjct 21840905 ATCTGGGAGATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAGTCGATCTC 21840846 Query 42360 GCCAAGGACACGGCCGGCTGGG---AGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 | | |||| || ||||| | ||||| || | ||||| ||| ||||| Sbjct 21840845 TCTCAAGACAATCGCGACTGGGAAAACTCACTATCCAACGACGAACGTCACTTCATCAAA 21840786 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || |||||||| ||||| || ||||| || || ||||| || | ||| | Sbjct 21840785 CACGTCCTCGCCTTCTTTGCCGCATCAGACGGAATCGTTCTGGAGAATCTCTCGACCCGA 21840726 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||||| || || ||| || || || || ||||||||| ||||| || || || Sbjct 21840725 TTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATC 21840666 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 ||||| | || |||||| |||| || ||| |||| |||||| || | Sbjct 21840665 GAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAA 21840606 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 ||| | | || || || || || || || || || | | ||| || || || Sbjct 21840605 GAGAGAGATCATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAA 21840546 Query 42657 TGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | || |||||| | | || | | || |||| ||||| | ||||| || Sbjct 21840545 TGGGCTATGAAATGGATCAACGGATCTCAAAGC----TTCGCTGAGAGAATCGTAGCTTT 21840490 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-C 42774 | | ||| || || || |||||||| || ||| || || |||||| | ||| Sbjct 21840489 TGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAA 21840430 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | |||| | ||||| |||||||| ||||| |||||| | || || ||||| || | Sbjct 21840429 ACGAGGT-TTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTC 21840371 Query 42835 TGCA 42838 | || Sbjct 21840370 TTCA 21840367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330984248960