Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq7 89.7 5e-13
>seq7
Length=24649197
Score = 89.7 bits (98), Expect = 5e-13
Identities = 187/275 (68%), Gaps = 8/275 (3%)
Strand=Plus/Minus
Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305
|| ||||| || || | || | ||||| || ||||||||||| || || || | |
Sbjct 2728666 ACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAACGGTACGCCGAGA 2728607
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
||||| || | || | |||||||| ||||| || || || || || || ||||||||
Sbjct 2728606 CCCATATCGGCTGAGCGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAAC 2728547
Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
|| |||| ||| || || ||||| ||||||| | | || | || ||||| ||
Sbjct 2728546 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGCC 2728487
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481
|||| || || | || ||| | ||||| || || || | ||| || || || |
Sbjct 2728486 GACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTGAAT-TAC-ATCTA--A 2728431
Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
| || ||||| || || || ||||| |||||||
Sbjct 2728430 GAGCTGATCAAATCCTTGCCCCGTATAATCAGCAT 2728396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441368960056640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |