Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 5e-13 >seq7 Length=24649197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 187/275 (68%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || ||||||||||| || || || | | Sbjct 2728666 ACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAACGGTACGCCGAGA 2728607 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| || || || || || || |||||||| Sbjct 2728606 CCCATATCGGCTGAGCGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAAC 2728547 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | || | || ||||| || Sbjct 2728546 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGCC 2728487 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| || || || | Sbjct 2728486 GACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTGAAT-TAC-ATCTA--A 2728431 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || || || ||||| ||||||| Sbjct 2728430 GAGCTGATCAAATCCTTGCCCCGTATAATCAGCAT 2728396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441368960056640