Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq6 87.8 1e-12 seq4 82.4 6e-11 >seq1 Length=33132539 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||| ||||||||| ||| ||||||||||||||||| || Sbjct 10397125 ACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 10397066 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | || |||||||| || ||||| || || | || ||||||||| || Sbjct 10397065 GAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGG 10397006 Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 | | |||||||| ||| || || | | || || | | || | |||| Sbjct 10397005 GATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTG----TCGATTGTGTCTGATGATT 10396950 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 10396949 CAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 10396895 >seq6 Length=25113588 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || | ||||| |||||| || |||||||||||||||||| || || Sbjct 22900892 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 22900833 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| || | |||||| ||||| || |||| | |||||| ||| || Sbjct 22900832 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 22900773 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 22900772 AATACCCTCTTTGTCC 22900757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| |||| ||||| || ||||||||||||||||||||| || Sbjct 23404190 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGC 23404131 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || || | |||||| ||||| || |||| | |||||| ||| || Sbjct 23404130 CAAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 23404071 Query 34020 CACGCTCTCTTTGTC 34034 | | ||||||||| Sbjct 23404070 GATACCCTCTTTGTC 23404056 >seq4 Length=23328337 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| || ||||||||||| || ||| ||||| ||||||||||| || Sbjct 16908332 CCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCT 16908273 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||||||||| || ||||| ||||| | || ||||| || Sbjct 16908272 AAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGATCAGGTGGA 16908213 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 16908212 ATACCCTCTTTGTCC 16908198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059031918192