Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq5 105 1e-17
>seq5
Length=21221946
Score = 105 bits (116), Expect = 1e-17
Identities = 280/424 (66%), Gaps = 4/424 (1%)
Strand=Plus/Minus
Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375
|| ||||||||||| | || ||||| || || || | ||||| ||||| ||| |
Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122
Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435
|| | |||||||| || | || ||||| || ||| || ||||| || || |||
Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062
Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACG-G 243493
| |||| | ||| | || || ||| | | ||||| | | | |||| |
Sbjct 3397061 TGCGATTTCGCTTGCCTTCTCTACACACTTCTCAAAACGAAGCTT--AGTGAAGAACGCG 3397004
Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553
| || |||| || || || || |||| ||| | || || | |||||||| |||
Sbjct 3397003 TGAAGTCAATCGTCTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 3396944
Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613
| ||| | | |||| |||||| ||| | ||| | ||||| || || || || || |
Sbjct 3396943 CGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGG 3396884
Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673
| | |||| |||||||| || | ||| |||||| | || || |||| |
Sbjct 3396883 ATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTTACAAATCCGTTTGATT 3396824
Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733
||||| || || ||||||||||| |||||||| || || || || ||||| ||||||
Sbjct 3396823 GGATGGAACTTATCTCGCTTCAAGGAAAAACTAATTTTTTTGAGAAACGTGTTGGTGATT 3396764
Query 243734 ATCA 243737
||||
Sbjct 3396763 ATCA 3396760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102870165067600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |