Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 105 1e-17 >seq5 Length=21221946 Score = 105 bits (116), Expect = 1e-17 Identities = 280/424 (66%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 || ||||||||||| | || ||||| || || || | ||||| ||||| ||| | Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || | |||||||| || | || ||||| || ||| || ||||| || || ||| Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062 Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACG-G 243493 | |||| | ||| | || || ||| | | ||||| | | | |||| | Sbjct 3397061 TGCGATTTCGCTTGCCTTCTCTACACACTTCTCAAAACGAAGCTT--AGTGAAGAACGCG 3397004 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | || |||| || || || || |||| ||| | || || | |||||||| ||| Sbjct 3397003 TGAAGTCAATCGTCTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 3396944 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||| | | |||| |||||| ||| | ||| | ||||| || || || || || | Sbjct 3396943 CGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGG 3396884 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 | | |||| |||||||| || | ||| |||||| | || || |||| | Sbjct 3396883 ATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTTACAAATCCGTTTGATT 3396824 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733 ||||| || || ||||||||||| |||||||| || || || || ||||| |||||| Sbjct 3396823 GGATGGAACTTATCTCGCTTCAAGGAAAAACTAATTTTTTTGAGAAACGTGTTGGTGATT 3396764 Query 243734 ATCA 243737 |||| Sbjct 3396763 ATCA 3396760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870165067600