Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 1e-15 seq5 89.7 6e-13 seq8 84.2 3e-11 >seq7 Length=24649197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| ||||| | || || | ||| || ||||| ||||| ||||| | ||| Sbjct 21840366 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 21840425 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || |||||||||||||| |||| |||||| ||| |||||||| || || || || || Sbjct 21840426 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 21840485 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || || | || | |||||| ||| | || | || | ||| ||||| || Sbjct 21840486 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATAGC 21840542 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 126296 ||| | || |||||| | ||| || | ||| | ||| || |||||| | | ||| Sbjct 21840543 CCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCT 21840602 Query 126297 -TTTCTGATGGATCTTTGATGTA 126318 | | || || ||||||||||| Sbjct 21840603 CTCTTTGTTG--TCTTTGATGTA 21840623 >seq5 Length=21221946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||||||||| | || |||||||| || || ||| || | |||||||||||||| Sbjct 15547860 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 15547801 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746 ||| || ||||| | |||||||||| | ||||||||| Sbjct 15547800 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 15547762 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || |||||||| ||||| | ||| || || || ||||| |||||||| || Sbjct 3397062 GTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAGTCC 3397121 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | |||||| || | |||||| || ||||||||||| || || ||||| Sbjct 3397122 TCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 3397181 >seq8 Length=22951293 Score = 84.2 bits (92), Expect = 3e-11 Identities = 190/284 (67%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || ||||| || || ||||| | ||||||||| | Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCC--- 6867646 Query 10936 CATACCACCC------GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAAC 10989 ||||||| || | | |||| |||| || || ||||| ||||| || || || Sbjct 6867647 ---ACCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACAC 6867703 Query 10990 GATACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGA 11048 ||||| || | ||| || || ||||| | ||| | ||||| ||||| | Sbjct 6867704 AATACAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCA 6867762 Query 11049 CACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATT 11108 |||| ||||| | |||||||| | | || | ||| | ||| || || | || Sbjct 6867763 CACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTT 6867822 Query 11109 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || || | |||| || | || ||||||||||| || ||| Sbjct 6867823 CTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGT 6867866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348403023680