Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq7 98.7 1e-15
seq5 89.7 6e-13
seq8 84.2 3e-11
>seq7
Length=24649197
Score = 98.7 bits (108), Expect = 1e-15
Identities = 182/263 (69%), Gaps = 7/263 (3%)
Strand=Plus/Plus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| ||||| ||||| | || || | ||| || ||||| ||||| ||||| | |||
Sbjct 21840366 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 21840425
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|| |||||||||||||| |||| |||||| ||| |||||||| || || || || ||
Sbjct 21840426 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 21840485
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
|| || || | || | |||||| ||| | || | || | ||| ||||| ||
Sbjct 21840486 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATAGC 21840542
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 126296
||| | || |||||| | ||| || | ||| | ||| || |||||| | | |||
Sbjct 21840543 CCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCT 21840602
Query 126297 -TTTCTGATGGATCTTTGATGTA 126318
| | || || |||||||||||
Sbjct 21840603 CTCTTTGTTG--TCTTTGATGTA 21840623
>seq5
Length=21221946
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707
||||||||||||| | || |||||||| || || ||| || | ||||||||||||||
Sbjct 15547860 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 15547801
Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746
||| || ||||| | |||||||||| | |||||||||
Sbjct 15547800 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 15547762
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| || || |||||||| ||||| | ||| || || || ||||| |||||||| ||
Sbjct 3397062 GTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAGTCC 3397121
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|| ||||| | |||||| || | |||||| || ||||||||||| || || |||||
Sbjct 3397122 TCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 3397181
>seq8
Length=22951293
Score = 84.2 bits (92), Expect = 3e-11
Identities = 190/284 (67%), Gaps = 14/284 (5%)
Strand=Plus/Plus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935
||| ||||||||||||||||| || ||||| || || ||||| | ||||||||| |
Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCC--- 6867646
Query 10936 CATACCACCC------GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAAC 10989
||||||| || | | |||| |||| || || ||||| ||||| || || ||
Sbjct 6867647 ---ACCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACAC 6867703
Query 10990 GATACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGA 11048
||||| || | ||| || || ||||| | ||| | ||||| ||||| |
Sbjct 6867704 AATACAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCA 6867762
Query 11049 CACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATT 11108
|||| ||||| | |||||||| | | || | ||| | ||| || || | ||
Sbjct 6867763 CACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTT 6867822
Query 11109 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152
| || || | |||| || | || ||||||||||| || |||
Sbjct 6867823 CTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGT 6867866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597348403023680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |