Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq7 113 4e-20
seq4 107 2e-18
seq2 105 7e-18
seq5 96.9 3e-15
seq1 91.5 1e-13
>seq6
Length=25113588
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445
|||| || || | ||| | || || || | | | |||||||| || ||||||||||||
Sbjct 23404875 AGCCACCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 23404816
Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
|| |||||| ||||| || || || || | |||| |||||||| ||||||||||
Sbjct 23404815 CCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAG 23404756
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
| |||||||| || || ||| || || | | || | |||||| | |||||
Sbjct 23404755 GGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCA 23404696
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | ||| | || || || |||||||| || || ||||||||||||
Sbjct 23404695 CCTCCAGCGTGATAGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATG 23404646
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||||| | ||| || || | | |||| || || || || ||||| ||| ||
Sbjct 905876 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTC 905935
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || || |||||||||| |||||| | ||| |||||||||||
Sbjct 905936 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 905995
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | |||| ||| |||| || | |||||| | ||| |
Sbjct 905996 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTG-TCGATGGTGTCAGAGCTCTCAA 906053
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || ||||| || ||||| ||||| || |||||
Sbjct 906054 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102
Score = 111 bits (122), Expect = 2e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || || || | | | |||||||| |||||||||||||| |
Sbjct 22758569 CCTCCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22758628
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| | || | || || |||||||| |||| | |||| | | ||| |||||||||||
Sbjct 22758629 AAAGTTCTGCCA-TCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 22758687
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| |||||||| ||| || ||| | |||| || | |||||| | |||||
Sbjct 22758688 GATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTG-TCGATGGTGTCAGAGCTCTCCA 22758746
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| || || || || || |||||
Sbjct 22758747 CCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||||| || || || | | |||||||| ||||||||||| || |
Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| | || | || || ||||| || |||| |||| | | ||| |||||||||||
Sbjct 23404129 AAAGTTCTGCCA-TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 23404071
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| |||||||| ||| || ||| | | || | |||||| | ||||||
Sbjct 23404070 GATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCAC 23404011
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||||| ||| || ||||||||||||||
Sbjct 23404010 CTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 23403963
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 905420 CCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCA 905479
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | |||||| || || ||||||| | |||| || | |||||||||||||||
Sbjct 905480 AGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGA 905539
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || ||| | | || | |||||| | ||| |||
Sbjct 905540 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACC 905599
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | ||||||||||| || || || ||||| ||||||||
Sbjct 905600 TCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 905646
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| || || ||||| | | | |||||||| |||||||||||||| |
Sbjct 22900891 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22900832
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | ||| || ||||| || |||| |||| | | ||| |||||||||||
Sbjct 22900831 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 22900772
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| |||||||| ||| || ||| | |||| || | |||||| | ||||||
Sbjct 22900771 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTG-TCGATGGTGTCAGAGCTCTCCAC 22900713
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||||| || || || || || |||||
Sbjct 22900712 CTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||| | || ||||| | | ||||||| ||||| ||||||||||| |
Sbjct 8749008 CCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 8749067
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | | |||| || | ||| |||||||| ||
Sbjct 8749068 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8749127
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || ||||| || ||| | || | ||| |||| || | |||||| | ||| |
Sbjct 8749128 ATTCCCTCTTTATC-CTGAATCTTAGCTTTGACATTG-TCAATGGTGTCTGAGCTCTCAA 8749185
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | ||||||||||| ||||| || ||||| || |||||
Sbjct 8749186 CCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| || ||||||| ||||| || ||||| || |
Sbjct 22901314 GACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTCAAGCTGTTTTCCAGCG 22901255
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||||||||| || ||||| ||||| ||| || || |
Sbjct 22901254 AAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 22901195
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||| || || | || | ||| || ||||||| ||| ||
Sbjct 22901194 TTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTG 22901135
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 22901134 ACGAAGATCTGCAT 22901121
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| || |||||||| || || || ||||| || ||||| || |
Sbjct 22901542 GACTCCTTTTGGATATTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGTTTTCCAGCG 22901483
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||||||||| |||||||| ||||| ||| || || |
Sbjct 22901482 AAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACG 22901423
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||| ||||||| || | || || || |||||||| ||
Sbjct 22901422 TTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTAATGGTCTTCCCGGTCAGAGTCTTC 22901363
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 22901362 ACGAAAATCTGCAT 22901349
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| | ||||| || || ||||||| |
Sbjct 905681 GACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCAAGCTGCTTACCGGCA 905740
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | ||| ||||||||||| || ||||||||||| ||| | |||| ||| |
Sbjct 905741 AAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTC-CTGAATCTTTGCTTTGAC 905799
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | ||| || || | || | || || ||||||||||| |
Sbjct 905800 GTTG-TCAATAGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTCTTGCCAGTCAGAGTCT 905858
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 905859 TGACAAAGATCTGCAT 905874
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| || ||| || ||||| || || || || |
Sbjct 22758374 GACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCG 22758433
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||||||||| |||||||| ||||| ||| || || |
Sbjct 22758434 AAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACG 22758493
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||| ||||| | || | || || || || ||||||||
Sbjct 22758494 TTGTCAATGGTGTCAGAGCTCTCTACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTC 22758553
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 22758554 ACGAAAATCTGCAT 22758567
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
|||||||| || ||||||||||| ||| | || || ||||| || ||||| || |
Sbjct 23404612 GACTCCTTCTGGATGTTGTAGTCAGCT-AAGGTGCGGCCATCCTCAAGCTGTTTTCCAGC 23404554
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538
|||| |||||||| ||||| ||||| || ||||| ||||| ||| || || |
Sbjct 23404553 GAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 23404494
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | |||||| | |||||| || | || | || ||||| |||| ||| |
Sbjct 23404493 ATTG-TCAATGGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTTACCGGTCAAAGTCT 23404435
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 23404434 TGACAAAGATCTGCAT 23404419
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || || || | | | |||||||| || |||||||| || |
Sbjct 22901119 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 22901060
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| | ||||| |||| |||| | | ||| |||||||||||
Sbjct 22901059 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 22901000
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||| || || ||| || || | | || | ||||| | |||||||
Sbjct 22900999 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACC 22900940
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || ||||| || ||||||||||||||
Sbjct 22900939 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| || |||| |||||| || | || | | | || ||||| ||||||||||| || |||
Sbjct 905192 CCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCT 905251
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || |||||||| | |||| || | ||||||||| || ||
Sbjct 905252 -AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGG 905310
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || | | || | ||||| | |||||
Sbjct 905311 GATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCA 905369
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || || || || || ||||| ||||||||
Sbjct 905370 CCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 905418
>seq7
Length=24649197
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| |||| ||| | | ||| || || | | |||||||||| ||||| ||||| ||
Sbjct 18994583 GCCACCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTCTGAATATTGTAATCAGC 18994642
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| |||||| ||||||||||||| | |||| || | ||| |||||||| |
Sbjct 18994643 CAAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCAG 18994702
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| ||| || | |||| || | ||||||| || |
Sbjct 18994703 GATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTG-TCAATTGTGTCGGAGCTTTCGA 18994761
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| ||||| || || || ||||||||
Sbjct 18994762 CCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 18994810
Score = 109 bits (120), Expect = 5e-19
Identities = 167/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | || | ||||||||||||| |||||||| || | |
Sbjct 18993672 CCACCACGAAGACGCAACACAAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAATC-CGC 18993730
Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
| || |||| ||||| ||||| || || | |||| || | ||||||||||||||
Sbjct 18993731 A-AGGGTGCGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAG 18993789
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563
| || ||||||||||| ||| | || | ||| | ||| || | |||||| | |||
Sbjct 18993790 GGATTCCTTCTTTGTC-TTGAATCTTAGCTTTCACGTTG-TCAATGGTGTCTGAGCTCTC 18993847
Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | || | |||||||| || |||||||| ||||| ||||||||
Sbjct 18993848 AACTTCTAGAGTAATGGTTTTACCGGTAAGAGTTTTCACAAATATCTGCAT 18993898
Score = 102 bits (112), Expect = 8e-17
Identities = 143/197 (73%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||| || | || || |||||| || || ||||||| |
Sbjct 18994161 GACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGACCGTCCTCAAGCTGCTTACCGGCA 18994220
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538
|||| || | ||| ||||||||||| || ||||| || || ||| | || | ||||
Sbjct 18994221 AAGATAAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTATC-TTGAATCTTAGCTTTAAG 18994279
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||||| | ||| ||||| | || | ||||| ||||| || ||||
Sbjct 18994280 ATTG-TCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCAGTGAGGGTTT 18994338
Query 138599 TTACAAAAATCTGCATG 138615
| ||||| |||||||||
Sbjct 18994339 TCACAAAGATCTGCATG 18994355
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
||||| || ||||| ||||| || ||| | |||||| |||||||| ||||| ||||
Sbjct 18993477 GACTCTTTCTGAATATTGTAATCCGCTAA-AGTACGACCATCCTCGAGCTGTTTTCCGGC 18993535
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTA 138538
| ||||||| | ||| ||||||||| ||| ||||||||||| ||| | || | ||||
Sbjct 18993536 AAAGATTAGCCTCTGCTGGTCCGGAACTATCCCTTCTTTGTC-CTGAATCTTGGCCTTTA 18993594
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | || || | ||| ||||| | || | || || || |||| ||| |
Sbjct 18993595 CGTTGTCAATCGTATCAGAGCTCTCGACCTCAAGTGTGATGGTCTTGCCCGTCAAAGTCT 18993654
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 18993655 TGACAAAAATCTGCAT 18993670
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||| ||||| || || |||||| |||||||||||||||||||
Sbjct 18994843 TTGACTCCTTTTGAATATTGTAATCAGCCAAAGTACGGCCATCCTCGAGTTGTTTACCGG 18994902
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
| |||| || || || ||||| |||| || |||||||||||
Sbjct 18994903 CAAAGATAAGCCGTTGCTGGTCTAGAGGAATCCCTTCTTTGTC 18994945
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || | ||| | | |||||||||| || |||||||| ||
Sbjct 18994355 GCCACCGCGAAGACGAAGTACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 18994414
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| |||||||| || ||||||| |||| || | ||||||||||| |||
Sbjct 18994415 AAGAGTACGGCCATCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGTTGGTCCGTAGG 18994474
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | ||| || | || ||
Sbjct 18994475 GATTCCTTCCTTGTCTTCGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGAC 18994534
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | ||| || || || ||||| || ||||| || ||||||
Sbjct 18994535 CTCAAGGGTTATCGTCTTCCCTGTAAGAGTCTTAACAAAGATTTGCATG 18994583
>seq4
Length=23328337
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 15771341 CCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCA 15771400
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | |||||| || || ||||||| | |||| || | |||||||||||||||
Sbjct 15771401 AGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGA 15771460
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || ||| | | || | |||||| | ||| |||
Sbjct 15771461 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACC 15771520
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | ||||||||||| || || || ||||| ||||||||
Sbjct 15771521 TCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 15771567
Score = 105 bits (116), Expect = 7e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||||| | ||| || || | | |||| || || || || ||||| ||| |
Sbjct 15771797 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 15771856
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || || |||||||||| |||||| | ||| |||||||||||
Sbjct 15771857 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 15771916
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | |||| ||| |||| || | |||||| | ||| |
Sbjct 15771917 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTG-TCGATGGTGTCAGAGCTCTCAA 15771974
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || ||||| || ||||| ||||| || |||||
Sbjct 15771975 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| | ||||| || || ||||||| |
Sbjct 15771602 GACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCAAGCTGCTTACCGGCA 15771661
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | ||| ||||||||||| || ||||||||||| ||| | |||| ||| |
Sbjct 15771662 AAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTC-CTGAATCTTTGCTTTGAC 15771720
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | ||| || || | || | || || ||||||||||| |
Sbjct 15771721 GTTG-TCAATAGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTCTTGCCAGTCAGAGTCT 15771779
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 15771780 TGACAAAGATCTGCAT 15771795
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| || |||| |||||| || | || | | | || ||||| ||||||||||| || |||
Sbjct 15771113 CCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCT 15771172
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || |||||||| | |||| || | ||||||||| || ||
Sbjct 15771173 -AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGG 15771231
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || | | || | ||||| | |||||
Sbjct 15771232 GATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCA 15771290
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || || || || || ||||| ||||||||
Sbjct 15771291 CCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 15771339
>seq2
Length=19320864
Score = 105 bits (116), Expect = 7e-18
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| |||| | ||| | || ||||| | | | ||||| ||||| |||||||| || |||
Sbjct 9126474 CCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGCT 9126533
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| ||||| || || ||||||| | |||| || | |||||| ||||||||
Sbjct 9126534 AA-AGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGAGG 9126592
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565
|||||||| ||||| ||| | |||| || | | || | ||||| | ||| |
Sbjct 9126593 GATACCTTCCTTGTCT-TGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCAA 9126651
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| || || || ||||||||||||||
Sbjct 9126652 CCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | || | | | || ||||| || ||||||||||| |
Sbjct 9215255 CCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCC 9215314
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || |||||||| |||||||| | |||| || | ||||||||| || ||
Sbjct 9215315 AAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 9215374
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || ||| | | || | ||||| | ||| |||
Sbjct 9215375 ATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTGTCTGAGCTCTCAACC 9215434
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| || || || ||||||||||||||
Sbjct 9215435 TCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9215481
>seq5
Length=21221946
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||||| ||| || || ||||| ||||
Sbjct 20743166 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCG 20743107
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || | ||||| |||||||| || || ||||| ||||| ||| || ||| | |
Sbjct 20743106 AAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACA 20743047
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||| || ||||| | || | || || || || || |||||
Sbjct 20743046 TTG-TCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTT 20742988
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 20742987 CACGAAGATCTGCAT 20742973
>seq1
Length=33132539
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477
||||||| || || |||||||| || ||| | ||| || || || ||||| || |||
Sbjct 29081725 TTGACTCTTTCTGGATGTTGTAATCCGCTAA-AGTGCGACCATCTTCAAGTTGCTTCCCG 29081667
Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537
| | ||||||| | ||| |||||||| || || ||||||||||| ||| ||| ||
Sbjct 29081666 GCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTTGCCTTC 29081607
Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| |||| || | ||| || | ||||| || | ||| | || || || |||| |||
Sbjct 29081606 ACATTG-TCAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGT 29081548
Query 138597 TTTTACAAAAATCTGCAT 138614
|| ||||| ||||||||
Sbjct 29081547 CTTGACAAATATCTGCAT 29081530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258082517120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |