Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq7 87.8 2e-12 seq8 86.0 8e-12 >seq1 Length=33132539 Score = 122 bits (134), Expect = 1e-22 Identities = 273/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2327078 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2327137 Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 |||| || | | | |||| |||| || || || ||||| || | |||||| Sbjct 2327138 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2327194 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || || || |||||| ||| || || | ||| || ||||| |||||| ||| Sbjct 2327195 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2327254 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||| ||||| | | | | | || | | |||||| || || ||| Sbjct 2327255 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2327313 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084 ||| || |||||| || || ||||| ||||| || || || || | || || | Sbjct 2327314 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2327373 Query 13085 ACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| ||||||| ||||||| | || | | | ||| || | || ||||| ||||| Sbjct 2327374 ACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2327433 Query 13145 GATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 13190 | ||| || || | ||| || |||||| || |||| ||| Sbjct 2327434 CACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2327479 >seq7 Length=24649197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/265 (68%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| ||||| | || || | ||| || ||||| || || ||||| | ||| Sbjct 21840366 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 21840425 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || |||||||||||||| |||| |||||| ||||||||||| || || || || || Sbjct 21840426 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 21840485 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGTATCAAACCACTTCATC 127708 || || || | | | ||| || ||| | || | ||| | ||| ||||| Sbjct 21840486 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-----ATCCATTTCATA 21840540 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-T 127767 ||||| | ||| |||||| | ||| || | ||| | ||| || |||||| | | | Sbjct 21840541 GCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCT 21840600 Query 127768 CT-TTTCTGATGGATCTTTGATGTA 127791 || | | || || ||||||||||| Sbjct 21840601 CTCTCTTTGTTG--TCTTTGATGTA 21840623 >seq8 Length=22951293 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || ||||| || || ||||| | ||||||||| | Sbjct 6867591 AACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCC---- 6867646 Query 12852 ATACCACCC------GCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 ||||||| || | | |||| |||| || || ||||| || ||||| || || Sbjct 6867647 --ACCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACA 6867704 Query 12906 ATACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 12964 ||||| || | ||| || || ||||| | ||| | ||||| ||||| || Sbjct 6867705 ATACAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCAC 6867763 Query 12965 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTC 13024 ||| ||||| | ||||||||| | | || | ||| | ||| || || | ||| Sbjct 6867764 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 6867823 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || | |||| || | || ||||||||||| || ||| Sbjct 6867824 TCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGT 6867866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501862487360