Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 4e-21
seq6 105 8e-18
seq2 104 3e-17
seq4 102 9e-17
>seq5
Length=21221946
Score = 116 bits (128), Expect = 4e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| ||||| |||||||||| || || || |||| ||
Sbjct 20743181 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 20743122
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||| || |||||||| ||||| ||||||||||| | || | | |||||||| |
Sbjct 20743121 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGG 20743062
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| || | | | | |||||| |||||| || || | || ||||| ||
Sbjct 20743061 ATCTTCGCTTTCACATTGTCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTTC 20743002
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
||||| || ||||| || ||||| ||||| ||
Sbjct 20743001 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 20742970
>seq6
Length=25113588
Score = 105 bits (116), Expect = 8e-18
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| ||||||| ||| | ||| |||||| || || |||||||| |
Sbjct 22900891 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22900832
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | ||
Sbjct 22900831 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 22900772
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||| |||||| |||||| |||| | | | ||||| |||| |||
Sbjct 22900771 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCC 22900715
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| || || || |||| ||| || || |||||||||||
Sbjct 22900714 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | || |||||| |||| || | || |||||| ||||| |||||||| |
Sbjct 23404417 CCACCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 23404358
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||||| | || || ||||||||||||||||| ||||| | ||||||||| | ||
Sbjct 23404357 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404298
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542
| || ||||| ||| |||||| ||| | ||| | | | || || |||| ||
Sbjct 23404297 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTATCAGAGCTC---TC 23404242
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| |||||||| || || || || || || || ||||| |||||
Sbjct 23404241 TACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 23404191
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||||| | |||| || |||||||| || |||||
Sbjct 8749271 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCAGCGAA 8749330
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | || | | ||||||||| |||||| ||||| |
Sbjct 8749331 AATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 8749390
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| ||| || || | |||||||||||||| ||||| || || ||
Sbjct 8749391 ATCAATAGTGTCAGAACTTTCAACCTCAAGGGTGATGGTTTTGCCAGTCAGGGTCTTGAC 8749450
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 8749451 AAAGATCTGCAT 8749462
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||||||||| | |||| || | || || || ||||||||||| ||||
Sbjct 905876 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTC 905935
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || ||||| || |||||||| || || | ||||||||| | ||
Sbjct 905936 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 905995
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| || ||||||||| ||||| ||| | | | | ||||| |||| ||
Sbjct 905996 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 906052
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | |||||||| ||||| || || ||||| ||||||||||||||
Sbjct 906053 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | | |||||| | || || |||||||| || |||||
Sbjct 22758376 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 22758435
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | ||||||||| |||||| ||| | |||
Sbjct 22758436 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 22758494
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| || || |||| |||||||| || || || || ||||
Sbjct 22758495 TGTCAATGGTGTCAGAGCTC---TCTACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTT 22758551
Query 46578 TAACAAAGATTTGCAT 46593
| || || || |||||
Sbjct 22758552 TCACGAAAATCTGCAT 22758567
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||||||||| || | ||| |||||| || || |||||||| |
Sbjct 22758569 CCTCCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22758628
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | | || || || || || ||||| || ||||| | ||||||||| | ||
Sbjct 22758629 AAAGTTCTGCCATCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 22758688
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||| |||||| |||||| |||| | | | ||||| |||| |||
Sbjct 22758689 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCC 22758745
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| || || || |||| ||| || || |||||||||||
Sbjct 22758746 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | || ||||| | || || ||||| || || |||||
Sbjct 23404610 CTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAA 23404551
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || ||||||||| |||||| ||| | |
Sbjct 23404550 GATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 23404491
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| || || |||| || ||
Sbjct 23404490 GTCAATGGTGTCTGAGCTC---TCCACTTCAAGGGTGATGGTCTTACCGGTCAAAGTCTT 23404434
Query 46579 AACAAAGATTTGCAT 46593
|||||||| |||||
Sbjct 23404433 GACAAAGATCTGCAT 23404419
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| | ||| || | || || |||||||| || |||||
Sbjct 23404838 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 23404779
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | ||||| ||| |||||| ||| | |||
Sbjct 23404778 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGT 23404720
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| ||||| |||| |||||| || || || ||||| || |
Sbjct 23404719 TGTCAATGGTGTCAGAGCTC---TCCACCTCCAGCGTGATAGTCTTCCCGGTCAGAGTCT 23404663
Query 46578 TAACAAAGATTTGCAT 46593
| || || || |||||
Sbjct 23404662 TCACGAAAATCTGCAT 23404647
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||||||| || | |||| ||| | ||| || || ||||||||||| || |
Sbjct 8749464 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 8749523
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || |||||||| || ||||| ||||| | |||||||| | ||
Sbjct 8749524 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 8749583
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| || ||||||||| |||||| ||| | | | | ||||| |||| ||
Sbjct 8749584 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 8749640
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | |||||||| || || || || ||||| ||||| | ||||||
Sbjct 8749641 ACCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACAAAAACTTGCAT 8749690
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| || | ||| |||||| ||||| |||||||| | | ||| ||| | || ||
Sbjct 22901330 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTC 22901271
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||| || || ||||| || | ||||||||||| | || | || |||||||||
Sbjct 22901270 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 22901211
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559
|||||| ||| | ||| | | | ||||| |||| || || || | ||||| |
Sbjct 22901210 GATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCAAGAGTGATCG 22901155
Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| ||||| |||| || || || ||||| |||||
Sbjct 22901154 TCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 22901121
Score = 86.0 bits (94), Expect = 7e-12
Identities = 151/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | ||| |||||||||||| ||||| || | ||||| || |
Sbjct 8748791 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCTGCAAGAGTCCGACC 8748850
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| |||||||| || || || || || | | ||||||||| | || | | |||||
Sbjct 8748851 ATCTTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 8748910
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
||| ||||| ||||| | | | ||||| |||| || || |||| ||
Sbjct 8748911 GTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAAAGT 8748967
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || ||||| || || || || |||||||| |||||
Sbjct 8748968 GATAGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 8749006
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| || | ||| ||||||||||||||||||||| | | ||||| |
Sbjct 22901564 ACGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTGCGACC 22901505
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||| || || ||||| || | ||||||||||| | || | | |||||
Sbjct 22901504 ATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 22901445
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553
|||| |||||| ||| | ||| | | | ||||| |||| || || || | |
Sbjct 22901444 GTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCTACCTCGAGGG 22901389
Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| ||||| || || ||||| || || || || || |||||
Sbjct 22901388 TAATGGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 22901349
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||| | ||||| ||| | || ||| |||||||| |||||||| |
Sbjct 8749008 CCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 8749067
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || |||||||| || || || || | | ||||||||| | ||
Sbjct 8749068 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8749127
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||| || ||| ||||| |||| | | | ||||| |||| ||
Sbjct 8749128 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 8749184
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | ||||| ||||| || || || || || ||||||||||||||
Sbjct 8749185 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||| |||| | |||||| | || || |||||||| || |||||
Sbjct 22886721 CTCTTTCTGGATGTTGTAATCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 22886662
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| || | | ||||||||| |||||| ||| | |||
Sbjct 22886661 GATGAGACGCTGCTGGTCCAAAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 22886603
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| ||||| || | |||||||| || || |||| || |
Sbjct 22886602 TGTCAATGGTGTCGGAGCTC---TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCT 22886546
Query 46578 TAACAAAGATTTGCAT 46593
| || ||||| |||||
Sbjct 22886545 TGACGAAGATCTGCAT 22886530
Score = 82.4 bits (90), Expect = 9e-11
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||||||||| || | || |||||| ||||| ||||| || |
Sbjct 22901119 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 22901060
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || | ||| || |||||||| ||||| | ||||||||| | ||
Sbjct 22901059 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 22901000
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542
| | ||||| ||| |||||| ||| | ||| | | | ||||| ||| ||
Sbjct 22900999 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCTGAACTC---TC 22900944
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| |||| |||||||| || || || || || || ||||| || |||||
Sbjct 22900943 CACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||| |||| | |||||| | || || |||||||| || |||||
Sbjct 23069730 CTCTTTCTGGATGTTGTAATCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 23069671
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| || | | ||||||||| |||||| ||| | |||
Sbjct 23069670 GATGAGACGCTGCTGGTCCAAAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 23069612
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| ||||| || | |||||||| || || |||| || |
Sbjct 23069611 TGTCAATGGTGTCGGAGCTC---TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCT 23069555
Query 46578 TAACAAAGATTTGCAT 46593
| || ||||| |||||
Sbjct 23069554 TGACGAAGATCTGCAT 23069539
>seq2
Length=19320864
Score = 104 bits (114), Expect = 3e-17
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | ||| |||||||||||| ||||| || | || ||||| |
Sbjct 9215038 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCC 9215097
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| ||||| || || | | ||| ||||| | || | | ||||||
Sbjct 9215098 ATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCCTCCTT 9215157
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|||| ||||| ||||| | | | ||||| |||| || || |||| |||
Sbjct 9215158 GTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAACGT 9215214
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| ||||| |||| ||||| ||||| ||||||||
Sbjct 9215215 AATGGTCTTGCCTGTCAAAGTTTTCACAAATATTTGCAT 9215253
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | ||| |||||||||||| ||||| || | || ||||| |
Sbjct 9126257 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCC 9126316
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| ||||| || || | | ||| ||||| | || | | ||||||
Sbjct 9126317 ATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCCTCCTT 9126376
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|||| ||||| ||||| | | | ||||| |||| || | |||| ||
Sbjct 9126377 GTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAATCTCCAAAGT 9126433
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || || || || || |||||||| |||||
Sbjct 9126434 GATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 9126472
Score = 82.4 bits (90), Expect = 9e-11
Identities = 136/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || | | ||| || | || |||||||| || || |||||
Sbjct 9214606 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 9214665
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||| ||||| | ||| | | |||||||||| ||||| ||||| |
Sbjct 9214666 GATGAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 9214725
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || |||| || || || ||||| |||| || ||
Sbjct 9214726 ATCGATGGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTT 9214782
Query 46579 AACAAAGATTTGCAT 46593
||||||||||||||
Sbjct 9214783 CACAAAGATTTGCAT 9214797
>seq4
Length=23328337
Score = 102 bits (112), Expect = 9e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| |||| || || || |||| ||||||||||| ||||||||
Sbjct 22908920 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 22908861
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| |||||||| || | || | | |||||||| |||||| ||||| |
Sbjct 22908860 ATCAATCGCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 22908801
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| || || || || | ||||| || || ||||| || ||||| ||
Sbjct 22908800 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 22908741
Query 46583 AAGATTTGCATTTT 46596
||||| ||||| ||
Sbjct 22908740 AAGATCTGCATCTT 22908727
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||||||||| | |||| || | || || || ||||||||||| ||||
Sbjct 15771797 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 15771856
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || ||||| || |||||||| || || | ||||||||| | ||
Sbjct 15771857 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 15771916
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| || ||||||||| ||||| ||| | | | | ||||| |||| ||
Sbjct 15771917 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 15771973
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | |||||||| ||||| || || ||||| ||||||||||||||
Sbjct 15771974 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565233482425920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |