Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq6 105 8e-18 seq2 104 3e-17 seq4 102 9e-17 >seq5 Length=21221946 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| ||||| |||||||||| || || || |||| || Sbjct 20743181 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 20743122 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || |||||||| ||||| ||||||||||| | || | | |||||||| | Sbjct 20743121 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGG 20743062 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| || | | | | |||||| |||||| || || | || ||||| || Sbjct 20743061 ATCTTCGCTTTCACATTGTCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTTC 20743002 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || ||||| || ||||| ||||| || Sbjct 20743001 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 20742970 >seq6 Length=25113588 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| ||||||| ||| | ||| |||||| || || |||||||| | Sbjct 22900891 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22900832 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | || Sbjct 22900831 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 22900772 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| |||||| |||||| |||| | | | ||||| |||| ||| Sbjct 22900771 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCC 22900715 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || |||| ||| || || ||||||||||| Sbjct 22900714 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | || |||||| ||||| |||||||| | Sbjct 23404417 CCACCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 23404358 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || ||||||||||||||||| ||||| | ||||||||| | || Sbjct 23404357 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404298 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || ||||| ||| |||||| ||| | ||| | | | || || |||| || Sbjct 23404297 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTATCAGAGCTC---TC 23404242 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || || || || || || ||||| ||||| Sbjct 23404241 TACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 23404191 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| | |||| || |||||||| || ||||| Sbjct 8749271 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCAGCGAA 8749330 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 8749331 AATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 8749390 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || | |||||||||||||| ||||| || || || Sbjct 8749391 ATCAATAGTGTCAGAACTTTCAACCTCAAGGGTGATGGTTTTGCCAGTCAGGGTCTTGAC 8749450 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 8749451 AAAGATCTGCAT 8749462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| || | || || || ||||||||||| |||| Sbjct 905876 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTC 905935 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| || |||||||| || || | ||||||||| | || Sbjct 905936 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 905995 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| ||||| ||| | | | | ||||| |||| || Sbjct 905996 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 906052 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 906053 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | | |||||| | || || |||||||| || ||||| Sbjct 22758376 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 22758435 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 22758436 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 22758494 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| |||||||| || || || || |||| Sbjct 22758495 TGTCAATGGTGTCAGAGCTC---TCTACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTT 22758551 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 22758552 TCACGAAAATCTGCAT 22758567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | ||| |||||| || || |||||||| | Sbjct 22758569 CCTCCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22758628 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || || || || || ||||| || ||||| | ||||||||| | || Sbjct 22758629 AAAGTTCTGCCATCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 22758688 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| |||||| |||||| |||| | | | ||||| |||| ||| Sbjct 22758689 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCC 22758745 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || |||| ||| || || ||||||||||| Sbjct 22758746 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || || ||||| || || ||||| Sbjct 23404610 CTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAA 23404551 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 23404550 GATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 23404491 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| || | |||||||| || || |||| || || Sbjct 23404490 GTCAATGGTGTCTGAGCTC---TCCACTTCAAGGGTGATGGTCTTACCGGTCAAAGTCTT 23404434 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 23404433 GACAAAGATCTGCAT 23404419 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | ||| || | || || |||||||| || ||||| Sbjct 23404838 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 23404779 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||| ||| |||||| ||| | ||| Sbjct 23404778 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGT 23404720 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| |||||| || || || ||||| || | Sbjct 23404719 TGTCAATGGTGTCAGAGCTC---TCCACCTCCAGCGTGATAGTCTTCCCGGTCAGAGTCT 23404663 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 23404662 TCACGAAAATCTGCAT 23404647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||| || | |||| ||| | ||| || || ||||||||||| || | Sbjct 8749464 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 8749523 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| || ||||| ||||| | |||||||| | || Sbjct 8749524 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 8749583 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| |||||| ||| | | | | ||||| |||| || Sbjct 8749584 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 8749640 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || || || || ||||| ||||| | |||||| Sbjct 8749641 ACCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACAAAAACTTGCAT 8749690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | ||| |||||| ||||| |||||||| | | ||| ||| | || || Sbjct 22901330 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTC 22901271 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| || || ||||| || | ||||||||||| | || | || ||||||||| Sbjct 22901270 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 22901211 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 |||||| ||| | ||| | | | ||||| |||| || || || | ||||| | Sbjct 22901210 GATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCAAGAGTGATCG 22901155 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| |||| || || || ||||| ||||| Sbjct 22901154 TCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 22901121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||||||||| ||||| || | ||||| || | Sbjct 8748791 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCTGCAAGAGTCCGACC 8748850 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || || || || || | | ||||||||| | || | | ||||| Sbjct 8748851 ATCTTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 8748910 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||||| | | | ||||| |||| || || |||| || Sbjct 8748911 GTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAAAGT 8748967 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||||| || || || || |||||||| ||||| Sbjct 8748968 GATAGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 8749006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| ||||||||||||||||||||| | | ||||| | Sbjct 22901564 ACGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTGCGACC 22901505 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || ||||| || | ||||||||||| | || | | ||||| Sbjct 22901504 ATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 22901445 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| | ||| | | | ||||| |||| || || || | | Sbjct 22901444 GTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCTACCTCGAGGG 22901389 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || ||||| || || || || || ||||| Sbjct 22901388 TAATGGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 22901349 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | || ||| |||||||| |||||||| | Sbjct 8749008 CCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 8749067 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 8749068 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8749127 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| || ||| ||||| |||| | | | ||||| |||| || Sbjct 8749128 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 8749184 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| ||||| || || || || || |||||||||||||| Sbjct 8749185 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| |||| | |||||| | || || |||||||| || ||||| Sbjct 22886721 CTCTTTCTGGATGTTGTAATCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 22886662 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| || | | ||||||||| |||||| ||| | ||| Sbjct 22886661 GATGAGACGCTGCTGGTCCAAAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 22886603 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | |||||||| || || |||| || | Sbjct 22886602 TGTCAATGGTGTCGGAGCTC---TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCT 22886546 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 22886545 TGACGAAGATCTGCAT 22886530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | || |||||| ||||| ||||| || | Sbjct 22901119 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 22901060 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||| || |||||||| ||||| | ||||||||| | || Sbjct 22901059 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 22901000 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||| ||| |||||| ||| | ||| | | | ||||| ||| || Sbjct 22900999 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCTGAACTC---TC 22900944 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| |||||||| || || || || || || ||||| || ||||| Sbjct 22900943 CACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| |||| | |||||| | || || |||||||| || ||||| Sbjct 23069730 CTCTTTCTGGATGTTGTAATCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 23069671 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| || | | ||||||||| |||||| ||| | ||| Sbjct 23069670 GATGAGACGCTGCTGGTCCAAAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 23069612 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | |||||||| || || |||| || | Sbjct 23069611 TGTCAATGGTGTCGGAGCTC---TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCT 23069555 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 23069554 TGACGAAGATCTGCAT 23069539 >seq2 Length=19320864 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||||||||| ||||| || | || ||||| | Sbjct 9215038 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCC 9215097 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| ||||| || || | | ||| ||||| | || | | |||||| Sbjct 9215098 ATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCCTCCTT 9215157 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||| ||||| | | | ||||| |||| || || |||| ||| Sbjct 9215158 GTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAACGT 9215214 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| |||| ||||| ||||| |||||||| Sbjct 9215215 AATGGTCTTGCCTGTCAAAGTTTTCACAAATATTTGCAT 9215253 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||||||||| ||||| || | || ||||| | Sbjct 9126257 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCC 9126316 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| ||||| || || | | ||| ||||| | || | | |||||| Sbjct 9126317 ATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCCTCCTT 9126376 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||| ||||| | | | ||||| |||| || | |||| || Sbjct 9126377 GTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAATCTCCAAAGT 9126433 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || || || |||||||| ||||| Sbjct 9126434 GATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 9126472 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | | ||| || | || |||||||| || || ||||| Sbjct 9214606 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 9214665 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | ||| | | |||||||||| ||||| ||||| | Sbjct 9214666 GATGAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 9214725 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| || || || ||||| |||| || || Sbjct 9214726 ATCGATGGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTT 9214782 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 9214783 CACAAAGATTTGCAT 9214797 >seq4 Length=23328337 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| |||| || || || |||| ||||||||||| |||||||| Sbjct 22908920 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 22908861 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | | |||||||| |||||| ||||| | Sbjct 22908860 ATCAATCGCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 22908801 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 22908800 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 22908741 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 22908740 AAGATCTGCATCTT 22908727 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| || | || || || ||||||||||| |||| Sbjct 15771797 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 15771856 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| || |||||||| || || | ||||||||| | || Sbjct 15771857 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 15771916 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| ||||| ||| | | | | ||||| |||| || Sbjct 15771917 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 15771973 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 15771974 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233482425920