Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 1e-18
seq6 98.7 7e-16
seq4 93.3 3e-14
>seq1
Length=33132539
Score = 107 bits (118), Expect = 1e-18
Identities = 171/242 (71%), Gaps = 5/242 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| || ||| || |||||||| | || ||||| || || || ||||| ||
Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | |||| ||||||||||| ||| | || ||||| || |||||||||| ||
Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| | || || | | || |||| | |||||||| ||| |
Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCG--ATTGTGTCTGATGATTCAA 10396947
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730
| || | || ||||| || ||||||| ||||| |||||||||||||| | | |||||
Sbjct 10396946 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCT-TGTTT 10396888
Query 39731 CG 39732
||
Sbjct 10396887 CG 10396886
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || || || ||||| || ||| ||| |||| || | ||| |||||| ||||
Sbjct 29081720 TCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGCTTCCCGGCAAAG 29081661
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|||| | |||||| |||| || | ||||||||||| || ||| || | |
Sbjct 29081660 ATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTTGCCTTCACATTG 29081601
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | || || | ||||||||| || | || || || || ||||| ||||| || ||
Sbjct 29081600 TCAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTGACA 29081541
Query 39709 AAGATCTGCAT 39719
|| ||||||||
Sbjct 29081540 AATATCTGCAT 29081530
>seq6
Length=25113588
Score = 98.7 bits (108), Expect = 7e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| ||||| || | ||| ||| || || || || ||||| ||||| || ||||
Sbjct 22886230 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCC 22886171
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
||||| || || ||| | ||||| | | ||||||||||| || | |||||| |||||
Sbjct 22886170 TCCAACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 22886111
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || ||||| ||| | | | ||||| | ||||||||| || | || || ||
Sbjct 22886110 TGGATCTTGGCTTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGT 22886052
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | |||||| ||||||||||||||
Sbjct 22886051 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 22886019
Score = 98.7 bits (108), Expect = 7e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| ||||| || | ||| ||| || || || || ||||| ||||| || ||||
Sbjct 23069239 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCC 23069180
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
||||| || || ||| | ||||| | | ||||||||||| || | |||||| |||||
Sbjct 23069179 TCCAACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 23069120
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || ||||| ||| | | | ||||| | ||||||||| || | || || ||
Sbjct 23069119 TGGATCTTGGCTTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGT 23069061
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | |||||| ||||||||||||||
Sbjct 23069060 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 23069028
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| ||||| || | ||| ||| || || ||||| ||||| ||||| || ||||
Sbjct 22759040 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAACGTACGGCCATCC 22759099
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | ||||| ||| | ||||| | | ||||||||||| || | |||||| |||||
Sbjct 22759100 TCTAGCTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 22759159
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || |||| ||| | | | ||||| | ||||||||| || | || || ||
Sbjct 22759160 TGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 22759218
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | ||| || ||||||||||||||
Sbjct 22759219 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 22759251
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || ||||| || | ||| ||||| || || || |||||||||
Sbjct 22886756 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 22886697
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| |||| || | || || || | || || | ||||||||| ||| | ||
Sbjct 22886696 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 22886637
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| ||||| ||||| || || || | ||| | | | ||||| | ||| |||||
Sbjct 22886636 ATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 22886578
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || || || || || ||||| || ||||||||||||||
Sbjct 22886577 TTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 22886530
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || ||||| || | ||| ||||| || || || |||||||||
Sbjct 23069765 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 23069706
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| |||| || | || || || | || || | ||||||||| ||| | ||
Sbjct 23069705 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 23069646
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| ||||| ||||| || || || | ||| | | | ||||| | ||| |||||
Sbjct 23069645 ATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 23069587
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || || || || || ||||| || ||||||||||||||
Sbjct 23069586 TTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 23069539
>seq4
Length=23328337
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||||| || ||||| || | || |||||| || ||||| |||||||||
Sbjct 15771797 CCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 15771856
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| || |||| || | ||||| ||| | || ||||| | |||||| |||| ||
Sbjct 15771857 AAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 15771916
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| |||||| ||||| || ||| ||| || |||| | ||||| | ||| || |
Sbjct 15771917 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCAA 15771974
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||| || || || || || | ||||| || ||||| |||||
Sbjct 15771975 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347366653437368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |