Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq4 131 2e-25 seq8 118 1e-21 seq7 98.7 1e-15 seq5 91.5 2e-13 >seq1 Length=33132539 Score = 136 bits (150), Expect = 5e-27 Identities = 333/498 (67%), Gaps = 20/498 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 2327051 GCCACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 2327107 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| |||| | | |||| | Sbjct 2327108 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 2327164 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | ||| || |||||||| |||||| || || Sbjct 2327165 CCAACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTG 2327224 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 2327225 AAAAGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCC 2327284 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | | |||||| ||| | |||||| ||||||||| || || || || || Sbjct 2327285 G-AGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTT 2327343 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| | ||||| ||||| || ||| ||| ||| | || Sbjct 2327344 CCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGT 2327403 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGC 16354 | | |||||||| | ||| ||||| ||||| | ||||| || || | ||||| | Sbjct 2327404 GAACCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTC 2327460 Query 16355 GTCAATCCCCTCAACATC 16372 ||| | || ||||||| Sbjct 2327461 GTCGACTCCAGCAACATC 2327478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| |||||||| ||||| | |||||||| || Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 26184187 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 26184188 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 26184247 Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 || || || ||| | ||| || || | ||||| || || || | || || ||| Sbjct 26184248 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCAACA 26184304 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || ||||| | ||||||||| | | ||| | || || ||| || || | || Sbjct 26184305 CCCACAAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 26184364 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | || || || |||||||||||||| ||| Sbjct 26184365 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 26184406 >seq4 Length=23328337 Score = 131 bits (144), Expect = 2e-25 Identities = 285/418 (68%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| || || | | ||| ||||| || | || | || ||| |||| | || || Sbjct 14548835 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CA 14548778 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| || | ||||| || | || ||||| | ||||||||| || Sbjct 14548777 AAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCT--- 14548721 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| || | | | |||| | || || ||||| || ||||| | |||||| ||| Sbjct 14548720 CCACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATG 14548661 Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || || || || ||| ||| ||||| || || | ||| || ||||| Sbjct 14548660 CAAGGAGCGTTCTCTTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACC 14548602 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | | || | || ||| || ||| || ||||| Sbjct 14548601 AACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGTACACCAGCTTCAC 14548543 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||||||| || | ||| || || || ||||| || ||| ||||| ||| Sbjct 14548542 CAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACAC 14548483 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || ||| |||||||| ||| || | ||||||| |||| ||| ||||| ||||| Sbjct 14548482 CTTTTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 14548425 >seq8 Length=22951293 Score = 118 bits (130), Expect = 1e-21 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| || ||||| | ||||||||| | Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCC--A 6867647 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || Sbjct 6867648 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 6867707 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 6867708 CAAGG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCCAC 6867763 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| | ||| || || || ||| Sbjct 6867764 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 6867823 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| |||||||| || Sbjct 6867824 TCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGG 6867865 >seq7 Length=24649197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATG 102146 || |||||| || ||| |||| |||| ||| | || ||||| || ||||||||| Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATG 21840537 Query 102147 AAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTG 102204 || ||| | ||| | || | ||| |||||| || || | || ||||| || | Sbjct 21840536 AAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCG 21840482 Query 102205 TTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTC 102264 |||| ||||| |||||||||||| ||| || | || | ||| | ||||| |||||| Sbjct 21840481 TTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTT 21840422 Query 102265 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || ||| ||||| ||||| | || || | ||||| || || ||| Sbjct 21840421 TAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 21840366 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 ||||||||||||| |||||||| |||| || |||||||| |||||| | ||| || || Sbjct 508712 TTGACATGGCCGCTGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTAAATATACACA 508771 Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||||| |||| | | || ||| ||||| | ||| | ||| |||||| |||| Sbjct 508772 TGGAAAAGCCAAACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGG 508828 >seq5 Length=21221946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 102201 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 102260 |||||||| |||||||||||||| || ||| || | || | ||||| ||||| ||| Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122 Query 102261 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || |||||||| || || || |||||||| | ||||| |||||||| ||||| ||| Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736999541120