Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 5e-27
seq4 131 2e-25
seq8 118 1e-21
seq7 98.7 1e-15
seq5 91.5 2e-13
>seq1
Length=33132539
Score = 136 bits (150), Expect = 5e-27
Identities = 333/498 (67%), Gaps = 20/498 (4%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | || | ||| ||||| || || | | || |||||
Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050
Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | || | || ||| || |||| ||||||||||||||||| |||| |||||
Sbjct 2327051 GCCACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 2327107
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058
|||| || ||||| | ||||||||| || |||| |||| | | |||| |
Sbjct 2327108 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 2327164
Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118
|| || ||||| || ||||| | ||| || |||||||| |||||| || ||
Sbjct 2327165 CCAACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTG 2327224
Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178
|| ||||| || || | ||| || ||||| ||||||||||| ||||| | | |
Sbjct 2327225 AAAAGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCC 2327284
Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
| | || | | |||||| ||| | |||||| ||||||||| || || || || ||
Sbjct 2327285 G-AGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTT 2327343
Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297
|| ||||| || ||| | ||||| ||||| || ||| ||| ||| | ||
Sbjct 2327344 CCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGT 2327403
Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGC 16354
| | |||||||| | ||| ||||| ||||| | ||||| || || | ||||| |
Sbjct 2327404 GAACCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTC 2327460
Query 16355 GTCAATCCCCTCAACATC 16372
||| | || |||||||
Sbjct 2327461 GTCGACTCCAGCAACATC 2327478
Score = 98.7 bits (108), Expect = 1e-15
Identities = 196/282 (70%), Gaps = 10/282 (4%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| ||||| | ||| |||||||| ||||| | |||||||| ||
Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 26184187
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || ||
Sbjct 26184188 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 26184247
Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148
|| || || ||| | ||| || || | ||||| || || || | || || |||
Sbjct 26184248 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCAACA 26184304
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208
|| ||||| | ||||||||| | | ||| | || || ||| || || | ||
Sbjct 26184305 CCCACAAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 26184364
Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250
|| || | || | || || || |||||||||||||| |||
Sbjct 26184365 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 26184406
>seq4
Length=23328337
Score = 131 bits (144), Expect = 2e-25
Identities = 285/418 (68%), Gaps = 14/418 (3%)
Strand=Plus/Minus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974
|||||| || || | | ||| ||||| || | || | || ||| |||| | || ||
Sbjct 14548835 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CA 14548778
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|||||||||||||| || | ||||| || | || ||||| | ||||||||| ||
Sbjct 14548777 AAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCT--- 14548721
Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
|||| || | | | |||| | || || ||||| || ||||| | |||||| |||
Sbjct 14548720 CCACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATG 14548661
Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
|| || || || || ||| ||| ||||| || || | ||| || |||||
Sbjct 14548660 CAAGGAGCGTTCTCTTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACC 14548602
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209
|||||||||||| ||||| | | | | | || | || ||| || ||| || |||||
Sbjct 14548601 AACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGTACACCAGCTTCAC 14548543
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269
| ||||||||| || | ||| || || || ||||| || ||| ||||| |||
Sbjct 14548542 CAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACAC 14548483
Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
|| ||| |||||||| ||| || | ||||||| |||| ||| ||||| |||||
Sbjct 14548482 CTTTTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 14548425
>seq8
Length=22951293
Score = 118 bits (130), Expect = 1e-21
Identities = 200/282 (71%), Gaps = 12/282 (4%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| ||||||||||| ||||| || ||||| | ||||||||| |
Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCC--A 6867647
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| ||| ||||| | | |||| | ||||| ||||||||||||||||| || || ||
Sbjct 6867648 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 6867707
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| || ||||| || || ||||| | ||||| || || || | || |||||
Sbjct 6867708 CAAGG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCCAC 6867763
Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207
||||||||| | ||||||||| | | || | ||| | ||| || || || |||
Sbjct 6867764 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 6867823
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| || | |||| || | ||| ||||| |||||||| ||
Sbjct 6867824 TCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGG 6867865
>seq7
Length=24649197
Score = 98.7 bits (108), Expect = 1e-15
Identities = 164/236 (69%), Gaps = 7/236 (3%)
Strand=Plus/Minus
Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATG 102146
|| |||||| || ||| |||| |||| ||| | || ||||| || |||||||||
Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATG 21840537
Query 102147 AAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTG 102204
|| ||| | ||| | || | ||| |||||| || || | || ||||| || |
Sbjct 21840536 AAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCG 21840482
Query 102205 TTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTC 102264
|||| ||||| |||||||||||| ||| || | || | ||| | ||||| ||||||
Sbjct 21840481 TTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTT 21840422
Query 102265 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
| ||||| || ||| ||||| ||||| | || || | ||||| || || |||
Sbjct 21840421 TAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 21840366
Score = 86.0 bits (94), Expect = 8e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247
||||||||||||| |||||||| |||| || |||||||| |||||| | ||| || ||
Sbjct 508712 TTGACATGGCCGCTGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTAAATATACACA 508771
Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304
|||||| |||| | | || ||| ||||| | ||| | ||| |||||| ||||
Sbjct 508772 TGGAAAAGCCAAACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGG 508828
>seq5
Length=21221946
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 102201 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 102260
|||||||| |||||||||||||| || ||| || | || | ||||| ||||| |||
Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122
Query 102261 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| |||||||| || || || |||||||| | ||||| |||||||| ||||| |||
Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620736999541120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |