Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq5 95.1 1e-14 seq2 84.2 3e-11 >seq1 Length=33132539 Score = 105 bits (116), Expect = 8e-18 Identities = 325/497 (65%), Gaps = 18/497 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| |||||||| || | | ||| || || Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 2327051 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2327110 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | | ||| | |||| Sbjct 2327111 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 2327167 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | ||| || || || || || | || | || |||| Sbjct 2327168 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2327227 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || | || |||||||| || ||||||||||| || | ||||| Sbjct 2327228 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 2327281 Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || || |||||| ||| | |||||||| |||||| || || || || Sbjct 2327282 CCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTT 2327341 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || |||||||| | |||| | || || | || ||||||| ||||||| | || Sbjct 2327342 TTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCA 2327401 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973 | | | |||||||||||| || || ||||| | ||| | |||| |||||| | Sbjct 2327402 GTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCG 2327461 Query 11974 TCGATACCCTCAACATC 11990 |||| || ||||||| Sbjct 2327462 TCGACTCCAGCAACATC 2327478 >seq5 Length=21221946 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 119550 AGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAG 119609 ||||||||||||||||||| |||||||||||| ||||| | |||||| ||||| || ||| Sbjct 3397105 AGTCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAG 3397164 Query 119610 AAGATGCCCTCCACACA 119626 ||||| || || ||||| Sbjct 3397165 AAGATACCTTCAACACA 3397181 >seq2 Length=19320864 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| |||||| Sbjct 13582999 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCCGT 13583057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970875908800