Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 8e-18
seq5 95.1 1e-14
seq2 84.2 3e-11
>seq1
Length=33132539
Score = 105 bits (116), Expect = 8e-18
Identities = 325/497 (65%), Gaps = 18/497 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || || || ||||| | || | ||| |||||||| || | | ||| || ||
Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| | || | || ||||| | | || ||||| ||||| || || || ||||| ||
Sbjct 2327051 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2327110
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679
| |||||||| | ||||| || | | |||| | | | | ||| | ||||
Sbjct 2327111 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 2327167
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
||||| || || ||||| | ||| || || || || || | || | || ||||
Sbjct 2327168 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2327227
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| || || || | || |||||||| || ||||||||||| || | |||||
Sbjct 2327228 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 2327281
Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | || || |||||| ||| | |||||||| |||||| || || || ||
Sbjct 2327282 CCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTT 2327341
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913
|| || |||||||| | |||| | || || | || ||||||| ||||||| | ||
Sbjct 2327342 TTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCA 2327401
Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973
| | | |||||||||||| || || ||||| | ||| | |||| |||||| |
Sbjct 2327402 GTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCG 2327461
Query 11974 TCGATACCCTCAACATC 11990
|||| || |||||||
Sbjct 2327462 TCGACTCCAGCAACATC 2327478
>seq5
Length=21221946
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 119550 AGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAG 119609
||||||||||||||||||| |||||||||||| ||||| | |||||| ||||| || |||
Sbjct 3397105 AGTCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAG 3397164
Query 119610 AAGATGCCCTCCACACA 119626
||||| || || |||||
Sbjct 3397165 AAGATACCTTCAACACA 3397181
>seq2
Length=19320864
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||
Sbjct 13582999 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCCGT 13583057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588970875908800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |