Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 seq4 134 2e-26 seq8 132 6e-26 >seq1 Length=33132539 Score = 149 bits (164), Expect = 7e-31 Identities = 333/495 (67%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 2327051 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2327110 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 2327111 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 2327167 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | ||| ||||| ||||| |||||| ||| ||| || Sbjct 2327168 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2327227 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| || ||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 2327228 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2327286 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | |||||| ||||||||| || || || || || || Sbjct 2327287 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2327346 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | ||||| |||| || ||| ||| ||| | || | | Sbjct 2327347 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2327406 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCGTC 9664 |||||||| | ||| ||||| ||||| | ||||| || || | ||||| |||| Sbjct 2327407 CCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTCGTC 2327463 Query 9665 AATCCCCTCAACATC 9679 | || ||||||| Sbjct 2327464 GACTCCAGCAACATC 2327478 Score = 105 bits (116), Expect = 8e-18 Identities = 194/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| || Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 26184187 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 26184188 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 26184247 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || || ||| | || | || || | ||| | ||| || || || ||||| Sbjct 26184248 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCAACACC 26184306 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||| | ||||||||| | | ||| | || || ||| || || | || || Sbjct 26184307 CACAAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 26184366 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || | || | || || || |||||||||||||| ||| Sbjct 26184367 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 26184406 >seq4 Length=23328337 Score = 134 bits (148), Expect = 2e-26 Identities = 281/415 (68%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | ||| || || || | || | || ||| || | | ||||| Sbjct 14548835 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 14548776 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 14548775 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 14548719 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| || | | | |||| | || || ||||| || ||||| | ||||||||| || Sbjct 14548718 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATGCA 14548659 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || || ||| | | || ||||| || || ||| ||| || |||||||| Sbjct 14548658 AGGAGCGTTCTCTTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCAAC 14548599 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 14548598 AAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGTACACCAGCTTCACCAG 14548540 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||||||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 14548539 CAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTT 14548480 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||| |||||||| ||| || | ||||||| |||| ||| ||||| ||||| Sbjct 14548479 TTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 14548425 >seq8 Length=22951293 Score = 132 bits (146), Expect = 6e-26 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| | ||| ||||| | || ||| |||||| | ||| | ||| ||||| || Sbjct 6867504 TCAAATCTACCAGGACGCAACAGTGCGGAATCAAGAACATCCGGTCTATTGGTCGCAGCC 6867563 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| | ||| | | | | ||| ||||||||||| |||||||| || ||||| Sbjct 6867564 AACACAATGACACCGGAATTACCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATC 6867623 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9372 || ||||| | ||||||||| | | ||| ||||| | | |||| | ||||| | Sbjct 6867624 GTCTGTTCTCTCTCATCATTCCC--ACCACCCATCCCAGCTCCTCTTTGCCTACCCACAG 6867681 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGA 9431 |||||||||||||||| || |||||||| || | ||| | || | ||||| | | Sbjct 6867682 CATCAATCTCATCAATAAACACAATACAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAA 6867740 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || | ||| || || |||||||||||||| | ||||||||| | | || | ||| Sbjct 6867741 TCCCTAACTCTAGAAGCACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACAC 6867800 Query 9492 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | ||| || || || ||| || || | |||| || | ||| ||||| |||||| Sbjct 6867801 GAAAAGAACGGCACTCCAGCTTCTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTA 6867860 Query 9552 CCTGG 9556 || || Sbjct 6867861 CCCGG 6867865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975667167040