Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq696 544 9e-150
seq74 194 2e-44
>seq696
Length=154923
Score = 544 bits (602), Expect = 9e-150
Identities = 720/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Minus
Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550
||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| ||
Sbjct 1370 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1311
Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610
|||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| ||
Sbjct 1310 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251
Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670
|| || ||||| || || || | |||||||| | || |||| | || ||||||||
Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191
Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730
|| || || ||||| || |||| |||| || || ||| | || || ||||| ||
Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131
Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790
|||||||| || | | ||||| ||| |||| || ||||||||||| | | | |
Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071
Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850
| ||||| || | || | || || |||||| | |||||||| | | | |
Sbjct 1070 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1011
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910
|| |||||| | |||||||| ||||| |||||||| || || | || || |||
Sbjct 1010 CTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 951
Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970
|| ||| | | || ||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 950 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 891
Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030
||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| ||
Sbjct 890 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 831
Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090
|| || ||| ||| ||||| ||| | ||||| || || || || || |||||||||
Sbjct 830 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 771
Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150
|| | ||||| ||| | | ||||| || || || || | |||||| || | |||
Sbjct 770 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 711
Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210
|||| ||||| |||||||||||||| || || ||||| || || || || || || ||
Sbjct 710 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 651
Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270
|||| |||||||| ||||| ||||||||||| || | | | || |||||| ||||
Sbjct 650 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 591
Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330
| | || || ||| || | ||||| || || | ||||| |||| ||||| ||||||
Sbjct 590 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 531
Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390
| || || || || || ||||||||||| || ||| | | || | ||| |||
Sbjct 530 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 471
Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450
|||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| |||
Sbjct 470 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 411
Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489
||||||||||| |||||| |||| ||| |||| || ||
Sbjct 410 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 372
>seq74
Length=21493
Score = 194 bits (214), Expect = 2e-44
Identities = 271/379 (72%), Gaps = 11/379 (3%)
Strand=Plus/Minus
Query 169112 ATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 169171
||||| || || | || | |||||| || | ||||||| |||||||||||||||
Sbjct 11039 ATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAA 10980
Query 169172 GAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCA 169231
|||| || || ||||| || || ||||| || || || |||| |||||||
Sbjct 10979 TAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-------- 10928
Query 169232 AGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTA 169291
|||||||||| || | | | || |||||| |||| | | || || ||| || |
Sbjct 10927 -GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 10869
Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351
||||| || || | ||||| | || ||||| |||||| | || || || || || |||
Sbjct 10868 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 10809
Query 169352 CAATCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAG 169410
|||||||| || ||| || || || | | ||| ||| |||| ||| | ||||| |
Sbjct 10808 CAATCAGTAGTTGATAGTCAAGGGCGTGTT-ATTAATACTTGGGCTGATATTATTAACCG 10750
Query 169411 AGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTT 169470
| ||| ||||||||||||| |||||||| ||||| |||||||||||||| |||||| |
Sbjct 10749 TACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCT 10690
Query 169471 AGCATCTGCTGAGACTACA 169489
||| ||| |||| || ||
Sbjct 10689 AGCTGCTGTTGAGGCTCCA 10671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564436689358080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |