Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq696 531 8e-146 seq74 163 4e-35 seq2 96.9 5e-15 >seq696 Length=154923 Score = 531 bits (588), Expect = 8e-146 Identities = 703/974 (72%), Gaps = 6/974 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1349 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1290 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | |||| ||||||| ||||| ||||| || ||||| || || Sbjct 1289 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 1233 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 1232 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATT 1173 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || || || || || || ||||| ||||||||||| ||| | ||| Sbjct 1172 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTT 1113 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||||| ||||| ||||| |||| |||| || | | ||||| | ||||| Sbjct 1112 GATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 1053 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 1052 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 993 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || ||||| || || || ||||| | ||||| ||| || ||| | | |||||| Sbjct 992 ATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCA 933 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | |||||||| ||| ||||||| |||||| || ||||||||||| || ||||||| Sbjct 932 ATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 873 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 872 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTA 813 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| || || | || ||| ||||| ||||| | || || ||| | Sbjct 812 GCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 753 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || || || | |||||| || | ||||||| ||||| ||||| Sbjct 752 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAA 693 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||| |||||||| |||||||| ||||| || | ||||||||||| Sbjct 692 GAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATAT 633 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || ||||||||| || | | | || |||||| | || || | || || | || Sbjct 632 GCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGT 573 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 || ||| ||||| | ||| | |||||||| |||||||| || |||||||| ||| Sbjct 572 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTC 513 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || || |||||| ||||||||| || || ||||| Sbjct 512 AACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 453 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 452 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 393 Query 216272 TTGGCTGCTGCTGA 216285 | ||||||| ||| Sbjct 392 CTAGCTGCTGTTGA 379 >seq74 Length=21493 Score = 163 bits (180), Expect = 4e-35 Identities = 258/371 (70%), Gaps = 9/371 (2%) Strand=Plus/Minus Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || | || | |||||| || | ||||||| ||||| ||||| || Sbjct 11039 ATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAA 10980 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 |||| |||||||| |||||||| || ||||| ||||| || | ||||||| Sbjct 10979 TAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG------- 10927 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | | || |||||| | || || | || || | |||| Sbjct 10926 --TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 10869 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| |||||||| || |||||||| |||||| Sbjct 10868 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 10809 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || || |||||| ||||||||| || || ||||| | Sbjct 10808 CAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGT 10749 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 | ||||||||||||| ||||| || ||||| |||||||||||||| ||||| | Sbjct 10748 ACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 10689 Query 216275 GCTGCTGCTGA 216285 ||||||| ||| Sbjct 10688 GCTGCTGTTGA 10678 >seq2 Length=19320864 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 8835050 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 8835109 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | ||| |||||||| ||||| ||||| || ||||| || || Sbjct 8835110 GCAACTTCCGTTTTTGTTATC---GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 8835166 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 8835167 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATT 8835226 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGG 215536 | |||| ||| || || || || || || ||||| |||||| Sbjct 8835227 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG 8835271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745075117790080