Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq696 540 1e-148
seq74 188 8e-43
>seq696
Length=154923
Score = 540 bits (598), Expect = 1e-148
Identities = 710/984 (72%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||||
Sbjct 1361 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1302
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | || ||||| | || ||||| || ||||| || || ||
Sbjct 1301 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1242
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | |||||||| | || || | | || || ||||| || || ||
Sbjct 1241 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCC 1182
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || || ||| | || || || || || ||||||||
Sbjct 1181 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCT 1122
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| | | ||||| ||| | || ||||||||||||||| || || || | | |||||
Sbjct 1121 GCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 1062
Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058
| | || | || || |||||| | |||||||||| | |||| | ||||||
Sbjct 1061 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1002
Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118
||||||||||| || |||||||| ||||| || |||| || ||||| |||||
Sbjct 1001 CGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 942
Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178
| ||||| | ||||||||| ||| || || || ||||||||||| ||||| |||||
Sbjct 941 ATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 882
Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238
|| ||||| ||| | |||||||| || |||||||||||||||||||||||||| || |||
Sbjct 881 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 822
Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298
||| || |||||| | ||||| || | || || || ||||| ||||| | |||
Sbjct 821 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTA 762
Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358
|| ||| | | ||||| || || ||||| || || || || | || |||| ||||
Sbjct 761 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 702
Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418
|| |||||||||||||| ||||||||||| || || || || || ||||| || | |||
Sbjct 701 GGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATC 642
Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478
|||||||||||||| || |||||| |||| | | || |||||| | || | | ||
Sbjct 641 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 582
Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538
|||||| | || ||||| ||| | | |||||| | || ||||| || ||||| |||||
Sbjct 581 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 522
Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598
|| || |||||||| ||| | || ||| | || || || ||| ||||| ||
Sbjct 521 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 462
Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658
|| ||||| | || ||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 461 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 402
Query 170659 CCACTTGACTTGGCAACTGCTGAG 170682
|| || ||| | || ||| ||||
Sbjct 401 CCTCTAGACCTAGCTGCTGTTGAG 378
>seq74
Length=21493
Score = 188 bits (208), Expect = 8e-43
Identities = 264/372 (71%), Gaps = 9/372 (2%)
Strand=Plus/Minus
Query 170311 ATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAA 170370
||||| || || | ||| || || || || | || |||| |||||| |||||||||
Sbjct 11039 ATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAA 10980
Query 170371 GAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCT 170430
|||| ||||||||||| || || ||||| || ||||| || | |||||||
Sbjct 10979 TAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-------- 10928
Query 170431 AGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATC 170490
| || |||||| |||| | | || |||||| | || | | || |||||| | ||
Sbjct 10927 -GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 10869
Query 170491 TGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAAC 170550
||||| ||| | | |||||| |||| ||||| || ||||| ||||| || || ||||||
Sbjct 10868 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 10809
Query 170551 CAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGA 170610
|| ||| | || ||| | || || || ||| ||||| || || ||||| |
Sbjct 10808 CAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGT 10749
Query 170611 GCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTG 170670
| ||| | ||||||||||| |||||||| |||||||| ||||||||||| || ||| |
Sbjct 10748 ACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 10689
Query 170671 GCAACTGCTGAG 170682
|| ||| ||||
Sbjct 10688 GCTGCTGTTGAG 10677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582842929222400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |