Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq696 639 2e-178
seq74 215 6e-51
seq2 134 2e-26
>seq696
Length=154923
Score = 639 bits (708), Expect = 2e-178
Identities = 725/972 (75%), Gaps = 0/972 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 400 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 459
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 460 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 519
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || ||
Sbjct 520 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 579
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| |||||| |||
Sbjct 580 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 639
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || ||||||||||| ||||| || |||||||| ||||||||
Sbjct 640 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGC 699
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||||| ||||| | ||| | | ||||
Sbjct 700 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 759
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| || || | || |||||||||||||| || ||
Sbjct 760 GTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCT 819
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||||||| |||| ||| |||||
Sbjct 820 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 879
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| || || ||||| |||||||| ||| || || || | |||||
Sbjct 880 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAG 939
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| | ||| ||||||| || |||||||| ||||| || || ||||| ||||| |||
Sbjct 940 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACCGCAATCCAAGGA 999
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||||||| ||||| | ||||||||| ||||||||||| ||| | | ||||||
Sbjct 1000 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1059
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| ||||| | |||| |||| |||||| ||||| || ||||||||||| || | |
Sbjct 1060 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 1119
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||||| || || || ||||| | ||||||||| ||| | |||| | ||||
Sbjct 1120 GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCA 1179
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
|| ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| |||
Sbjct 1180 CCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1239
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884
||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | ||
Sbjct 1240 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 1299
Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944
|| || ||||| | | |||||||| |||| || | |||||| | |||| ||| | |
Sbjct 1300 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATC 1359
Query 84945 CAATCACAGAAG 84956
|| | |||||||
Sbjct 1360 CAGTTACAGAAG 1371
>seq74
Length=21493
Score = 215 bits (238), Expect = 6e-51
Identities = 258/350 (74%), Gaps = 9/350 (3%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| ||||||||||||| | ||| ||||
Sbjct 10699 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTAGTACGGTTAATA 10758
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 10759 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGATTGGTTGAAATTG 10818
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || ||
Sbjct 10819 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 10878
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| || ||
Sbjct 10879 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA--------AC-GG 10929
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || || |||||||| ||||| || ||||||| |||||||||
Sbjct 10930 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTATTCTTCTTGA 10989
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGAT 84334
||||| ||||||| | || || |||||||| | ||||| | |||
Sbjct 10990 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCTGAT 11039
>seq2
Length=19320864
Score = 134 bits (148), Expect = 2e-26
Identities = 176/244 (72%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 84713 CCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAAT 84772
||| || || || ||||| | ||||||||| ||| | |||| | |||||| |||||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 84773 GATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAAC 84832
|| ||||||||||| | ||||| |||| || || ||||| ||||| |||||||| ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 84833 TGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAAT 84892
||| || ||| ||| |||||| || | ||| | ||| || | | || || || ||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 84893 CATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACA 84952
||| | | |||||||| |||| || | |||||| | |||| ||| | ||| | |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032
Query 84953 GAAG 84956
||||
Sbjct 8835031 GAAG 8835028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571268629919680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |