Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 190 2e-43 seq4 96.9 4e-15 >seq7 Length=24649197 Score = 190 bits (210), Expect = 2e-43 Identities = 580/882 (66%), Gaps = 22/882 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || ||||| || |||||||| || | | || || | Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| ||||| | ||| ||| | || | || | | | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||| || ||||| | ||| || |||||| |||| |||||| || | || Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| || ||| ||| || || | || || || | | || Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGCA 18966 ||| | | ||||||| | || || | |||| | || | |||||||| || Sbjct 21840300 CGATTTCAAACGTTCTTCATCA--AGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 21840357 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| || || || |||||||| |||||||| ||||| ||||| | |||||| Sbjct 21840358 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 21840417 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085 || | |||| ||| || ||||||||||| ||| |||| | | ||||| ||||||||||| Sbjct 21840418 ATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACC 21840476 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAAT 19142 ||| || |||||||| || | ||| || | | || || ||| | || || Sbjct 21840477 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGT----TG-AT 21840530 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||||| ||||| || || || || | ||||| || || || || || | ||| Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 |||| | ||| | | ||||| | || | || | | | ||| ||||| || Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 21840650 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||||||||| || || || || || |||||||| || | ||||||| ||||| Sbjct 21840651 AGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTG 21840710 Query 19323 TACTTCACTACA-AAATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || || ||| |||| |||| | ||| || ||| ||||| || || ||| Sbjct 21840711 AACATC-GGACATGAATCGGGTCGA-GAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG---TATTCCAA 19437 || || || | || ||||| || || || ||| || || || || | | ||| Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAG 21840828 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | | |||| ||| | ||| |||||||| | ||||| || || || || ||||| Sbjct 21840829 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 || ||||| | ||| || | | ||||| || || || ||| Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATA 21840930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 |||||||| || || | || |||||||||||| | |||||| || || | || | Sbjct 506272 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 506213 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| ||| | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 506212 TAAGTTTTGATAGCGGAATCGATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 506154 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | | ||| || || |||||| | || | Sbjct 506153 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAG 506094 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | ||| ||| ||| ||||| || ||| Sbjct 506093 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAGATGATT 506045 >seq4 Length=23328337 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | ||| || ||||||||| Sbjct 502016 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACCA 501957 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| || |||||| | || | |||||| || ||| Sbjct 501956 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 501897 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | |||||| ||| || || || ||||| Sbjct 501896 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 501837 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || || || ||||||||| |||| | |||||| || || Sbjct 501836 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || | ||||| ||||| | ||| || ||||| | || || | ||| | Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTG-TGGATACCAACAGCAACCCTCATCA 501559 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| | | | | |||||| || || ||| | || | Sbjct 501558 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 501499 Query 48778 ATGTTTTAAAACCAAAATA 48796 |||||||| ||||| || Sbjct 501498 GAGTTTTAAATCCAAAGTA 501480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103909653440