Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 190 2e-43
seq4 96.9 4e-15
>seq7
Length=24649197
Score = 190 bits (210), Expect = 2e-43
Identities = 580/882 (66%), Gaps = 22/882 (2%)
Strand=Plus/Plus
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
||| ||||| || ||||||| || ||||| || |||||||| || | | || || |
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||| ||||||| ||||| | ||| ||| | || | || | | |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
|| ||||| || ||||| | ||| || |||||| |||| |||||| || | ||
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
| ||| || ||||| || ||| ||| || || | || || || | | ||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGCA 18966
||| | | ||||||| | || || | |||| | || | |||||||| ||
Sbjct 21840300 CGATTTCAAACGTTCTTCATCA--AGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 21840357
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|||||||| || || || |||||||| |||||||| ||||| ||||| | ||||||
Sbjct 21840358 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 21840417
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085
|| | |||| ||| || ||||||||||| ||| |||| | | ||||| |||||||||||
Sbjct 21840418 ATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACC 21840476
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAAT 19142
||| || |||||||| || | ||| || | | || || ||| | || ||
Sbjct 21840477 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGT----TG-AT 21840530
Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202
|||||||| ||||| || || || || | ||||| || || || || || | |||
Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590
Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262
|||| | ||| | | ||||| | || | || | | | ||| ||||| ||
Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 21840650
Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322
||||||||||| || || || || || |||||||| || | ||||||| |||||
Sbjct 21840651 AGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTG 21840710
Query 19323 TACTTCACTACA-AAATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380
|| || ||| |||| |||| | ||| || ||| ||||| || || |||
Sbjct 21840711 AACATC-GGACATGAATCGGGTCGA-GAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768
Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG---TATTCCAA 19437
|| || || | || ||||| || || || ||| || || || || | | |||
Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAG 21840828
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
|| | | |||| ||| | ||| |||||||| | ||||| || || || || |||||
Sbjct 21840829 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888
Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539
|| ||||| | ||| || | | ||||| || || || |||
Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATA 21840930
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|||||||| || || | || |||||||||||| | |||||| || || | || |
Sbjct 506272 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 506213
Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718
|| |||| ||| | ||||| ||||| | ||| || || || | ||| || | ||| |
Sbjct 506212 TAAGTTTTGATAGCGGAATCGATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 506154
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | |||||| |||||||| | |||| | | ||| || || |||||| | || |
Sbjct 506153 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAG 506094
Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827
|||||||| ||||| || | ||| ||| ||| ||||| || |||
Sbjct 506093 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAGATGATT 506045
>seq4
Length=23328337
Score = 96.9 bits (106), Expect = 4e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| || | || | | ||| || |||||||||
Sbjct 502016 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACCA 501957
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || ||| || |||||| | || | |||||| || |||
Sbjct 501956 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 501897
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| ||||| || || ||| ||| | |||||| ||| || || || |||||
Sbjct 501896 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 501837
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
|| || || ||||||||| |||| | |||||| || ||
Sbjct 501836 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796
Score = 86.0 bits (94), Expect = 7e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| || || | || |||||||||||| | |||||| ||| || | ||| |
Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
|| |||| || | ||||| ||||| | ||| || ||||| | || || | ||| |
Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTG-TGGATACCAACAGCAACCCTCATCA 501559
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | |||||| |||||||||| | | | | |||||| || || ||| | || |
Sbjct 501558 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 501499
Query 48778 ATGTTTTAAAACCAAAATA 48796
|||||||| ||||| ||
Sbjct 501498 GAGTTTTAAATCCAAAGTA 501480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562103909653440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |