Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq696 493 4e-135 seq74 168 2e-37 seq2 114 4e-21 >seq696 Length=154923 Score = 493 bits (546), Expect = 4e-135 Identities = 699/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1370 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1311 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 1310 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || || || || | | || | ||| || || || | ||||||||||||||| Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| || || || ||| |||| ||| | Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1070 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1011 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| ||||||||| |||| || | | || || || Sbjct 1010 CTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 951 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | ||||| | || || || |||||| |||||| |||||||| || ||| Sbjct 950 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 891 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 890 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 831 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | ||||| ||||||||| || Sbjct 830 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 771 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 770 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 711 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || |||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 710 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 651 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || || |||||| | |||||||| | || Sbjct 650 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 591 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| | || ||||| || ||| Sbjct 590 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 531 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 530 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 471 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 470 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 411 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 410 CACAACTTCCCTCTAGACCTAGC 388 >seq74 Length=21493 Score = 168 bits (186), Expect = 2e-37 Identities = 229/318 (72%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 || || ||||| ||| | || || || ||||| ||||| || || || ||||| |||| Sbjct 10994 TTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 10935 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587 || || | |||| || || |||||| | |||||||| | || ||||| Sbjct 10934 ATCTTCC---------GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGG 10884 Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 ||||| || || || ||| | || || | ||||| |||| ||||| || ||||||||| Sbjct 10883 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 10824 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGC 26706 ||||| || || ||||| |||||||| ||| || || || | || || ||| ||||| Sbjct 10823 GGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGC 10765 Query 26707 TGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAA 26766 |||| | | ||||| ||||| | || | ||||||||||| || ||||||||||| || Sbjct 10764 TGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAA 10705 Query 26767 CTTTCCACTTGACTTAGC 26784 ||| || || ||| |||| Sbjct 10704 CTTCCCTCTAGACCTAGC 10687 >seq2 Length=19320864 Score = 114 bits (126), Expect = 4e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 8835029 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 8835088 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||| | | || ||||| || || || Sbjct 8835089 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCT 8835148 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 8835149 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 8835208 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || || || || | | || | ||| || || || | ||||||||||||||| Sbjct 8835209 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 8835268 Query 26042 TGG 26044 ||| Sbjct 8835269 TGG 8835271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146725187306304