Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq696 493 4e-135
seq74 168 2e-37
seq2 114 4e-21
>seq696
Length=154923
Score = 493 bits (546), Expect = 4e-135
Identities = 699/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || ||||| |||||||| || | |||||||| || || |
Sbjct 1370 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1311
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || |||| | | || ||| | |||||| | || ||||| || || ||
Sbjct 1310 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || || || || | | || | ||| || || || | |||||||||||||||
Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131
Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101
|||||||||| | | || || ||||||||||| || || || ||| |||| ||| |
Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071
Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161
| ||||| ||| | || ||||| ||| || | |||||||||| || | |
Sbjct 1070 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1011
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221
|| || ||| | || ||||| ||||||||| |||| || | | || || ||
Sbjct 1010 CTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 951
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | ||||| | || || || |||||| |||||| |||||||| || |||
Sbjct 950 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 891
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
||||||||||| ||||||||| | |||||||| || || || || || || |||||||||
Sbjct 890 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 831
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401
|| || ||| ||||| ||||| || ||||| || | ||||| ||||||||| ||
Sbjct 830 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 771
Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461
||||| ||||| | || ||||| ||||| | | || ||| | ||
Sbjct 770 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 711
Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521
|| | || |||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 710 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 651
Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581
|||| || || || ||||| ||||| || || |||||| | |||||||| | ||
Sbjct 650 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 591
Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641
|||||||||| || || || ||| | || || | ||||| | || ||||| || |||
Sbjct 590 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 531
Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701
||||||||||| || || ||||| |||||||| ||| | | ||| | || |||
Sbjct 530 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 471
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 470 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 411
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|| ||||| || || ||| ||||
Sbjct 410 CACAACTTCCCTCTAGACCTAGC 388
>seq74
Length=21493
Score = 168 bits (186), Expect = 2e-37
Identities = 229/318 (72%), Gaps = 11/318 (3%)
Strand=Plus/Minus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
|| || ||||| ||| | || || || ||||| ||||| || || || ||||| ||||
Sbjct 10994 TTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 10935
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| || | |||| || || |||||| | |||||||| | || |||||
Sbjct 10934 ATCTTCC---------GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGG 10884
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
||||| || || || ||| | || || | ||||| |||| ||||| || |||||||||
Sbjct 10883 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 10824
Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGC 26706
||||| || || ||||| |||||||| ||| || || || | || || ||| |||||
Sbjct 10823 GGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGC 10765
Query 26707 TGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAA 26766
|||| | | ||||| ||||| | || | ||||||||||| || ||||||||||| ||
Sbjct 10764 TGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAA 10705
Query 26767 CTTTCCACTTGACTTAGC 26784
||| || || ||| ||||
Sbjct 10704 CTTCCCTCTAGACCTAGC 10687
>seq2
Length=19320864
Score = 114 bits (126), Expect = 4e-21
Identities = 171/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || ||||| |||||||| || | |||||||| || || |
Sbjct 8835029 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 8835088
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || |||| | | || ||| | |||| | | || ||||| || || ||
Sbjct 8835089 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCT 8835148
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 8835149 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 8835208
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || || || || | | || | ||| || || || | |||||||||||||||
Sbjct 8835209 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 8835268
Query 26042 TGG 26044
|||
Sbjct 8835269 TGG 8835271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146725187306304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |