Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq696 547 2e-151
seq74 197 4e-46
seq2 109 2e-19
>seq696
Length=154923
Score = 547 bits (606), Expect = 2e-151
Identities = 719/996 (72%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 375 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 434
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 435 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 494
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || ||||||||||| | ||
Sbjct 495 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 554
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 555 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 614
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || |||||||| |||||||| | || ||||| || || ||||| || ||
Sbjct 615 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 674
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || ||||||||||| |||||| | || || | || ||||||| |
Sbjct 675 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 734
Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379
|| ||||| | || | ||||| || | || ||||||||| || | |
Sbjct 735 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 794
Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439
|| |||||||| || || ||||| | ||| || || || |||||||| || ||||| ||
Sbjct 795 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 854
Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499
||||| || |||| |||||| |||||||| || || || || |||||||||||||||||
Sbjct 855 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 914
Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559
||||| || || |||| || |||| ||||| |||||| || ||||||||||| ||
Sbjct 915 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 974
Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619
|||||| || || ||||| || | |||||| || | ||||||||||||| | ||
Sbjct 975 TGAATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1034
Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679
|||| ||| | | ||||| | |||||| | ||||| |||| ||| || || ||
Sbjct 1035 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 1094
Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739
||| |||| ||| || || | || ||||||||||||||| ||||| || || | ||| ||
Sbjct 1095 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 1154
Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799
|| || | || | || || || || || || |||||||| || || | | |||
Sbjct 1155 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1214
Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859
|| ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || |
Sbjct 1215 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1274
Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919
||| | | ||| || || | | ||||||||| | || |||||||| || | ||
Sbjct 1275 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1334
Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955
|| ||||| | || || || | ||||| ||| ||
Sbjct 1335 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370
>seq74
Length=21493
Score = 197 bits (218), Expect = 4e-46
Identities = 256/355 (72%), Gaps = 9/355 (3%)
Strand=Plus/Plus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 10674 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 10733
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
||| || |||| | |||||||| ||| ||||||||||| | || | || |
Sbjct 10734 CATACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 10793
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || |||||||||||| | ||
Sbjct 10794 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 10853
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 10854 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 10913
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || | ||||||| | || ||||| || |||||||| || ||
Sbjct 10914 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 10964
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314
|||||| || || | ||||||||| |||||| | || || | || |||||||
Sbjct 10965 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 11019
>seq2
Length=19320864
Score = 109 bits (120), Expect = 2e-19
Identities = 170/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 36713 CCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGAT 36772
|||||| ||||| || || | ||| || || || | || | || || || || ||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 36773 GATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCAC 36832
|| |||||||| || || | | ||| || ||||| |||||||||||||| ||||| ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 36833 GGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGAT 36892
||||| ||||||| ||||| || | ||| | | ||| || || | | ||||||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 36893 CATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 36952
||| | || |||||||| || | || || ||||| | || || || | ||||| |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032
Query 36953 TAA 36955
||
Sbjct 8835031 GAA 8835029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150453156494384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |