Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq696 547 2e-151 seq74 197 4e-46 seq2 109 2e-19 >seq696 Length=154923 Score = 547 bits (606), Expect = 2e-151 Identities = 719/996 (72%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 375 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 434 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 435 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 494 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 495 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 554 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 555 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 614 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| |||||||| | || ||||| || || ||||| || || Sbjct 615 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 674 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 675 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 734 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | ||||| || | || ||||||||| || | | Sbjct 735 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 794 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 795 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 854 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 855 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 914 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| || || |||| || |||| ||||| |||||| || ||||||||||| || Sbjct 915 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 974 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || || ||||| || | |||||| || | ||||||||||||| | || Sbjct 975 TGAATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1034 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 1035 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 1094 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| |||| ||| || || | || ||||||||||||||| ||||| || || | ||| || Sbjct 1095 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 1154 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || || | || | || || || || || || |||||||| || || | | ||| Sbjct 1155 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1214 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 1215 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1274 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 1275 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1334 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||||| ||| || Sbjct 1335 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370 >seq74 Length=21493 Score = 197 bits (218), Expect = 4e-46 Identities = 256/355 (72%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 10674 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 10733 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || |||| | |||||||| ||| ||||||||||| | || | || | Sbjct 10734 CATACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 10793 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 10794 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 10853 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 10854 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 10913 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || | ||||||| | || ||||| || |||||||| || || Sbjct 10914 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 10964 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314 |||||| || || | ||||||||| |||||| | || || | || ||||||| Sbjct 10965 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 11019 >seq2 Length=19320864 Score = 109 bits (120), Expect = 2e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 36713 CCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGAT 36772 |||||| ||||| || || | ||| || || || | || | || || || || || Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212 Query 36773 GATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCAC 36832 || |||||||| || || | | ||| || ||||| |||||||||||||| ||||| || Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152 Query 36833 GGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGAT 36892 ||||| ||||||| ||||| || | ||| | | ||| || || | | |||||| Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092 Query 36893 CATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 36952 ||| | || |||||||| || | || || ||||| | || || || | ||||| ||| Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032 Query 36953 TAA 36955 || Sbjct 8835031 GAA 8835029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150453156494384