Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq696 540 3e-149
seq74 199 1e-46
seq2 114 4e-21
>seq696
Length=154923
Score = 540 bits (598), Expect = 3e-149
Identities = 719/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 372 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 431
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 432 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 491
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || ||||||||||| |
Sbjct 492 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 551
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 552 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 611
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || |||||||| |||||||| | || ||||| || || ||||| ||
Sbjct 612 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 671
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || ||||||||||| |||||| | || || | || |||||||
Sbjct 672 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 731
Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856
| || ||||| | || | ||||| || | || ||||||||| || |
Sbjct 732 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 791
Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916
| || |||||||| || || ||||| | ||| || || || |||||||| || |||||
Sbjct 792 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 851
Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|| ||||| || |||| |||||| |||||||| || || || || ||||||||||||||
Sbjct 852 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 911
Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036
||| ||||| || || |||| || |||| ||||| |||||| || |||||||||||
Sbjct 912 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 971
Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096
|||||||| || || ||||| || | ||| || || | ||||||||||||| |
Sbjct 972 AGCTGAATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1031
Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156
|| |||| ||| | | || | | |||||| | ||||| |||| ||| || ||
Sbjct 1032 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1091
Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216
|||||| || | ||| || || | || ||||||||||||||| ||||| || || | |||
Sbjct 1092 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 1151
Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276
|| || ||| | || | || || || || || || |||||||| || || | |
Sbjct 1152 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1211
Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336
||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| ||
Sbjct 1212 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1271
Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396
| ||| | | ||| || || | | ||||||||| | || |||||||| || |
Sbjct 1272 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1331
Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|| || ||||| | || || || | ||||| ||| ||
Sbjct 1332 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370
>seq74
Length=21493
Score = 199 bits (220), Expect = 1e-46
Identities = 258/358 (72%), Gaps = 9/358 (3%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 10671 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 10730
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || |||| | |||||||| ||| ||||||||||| | || | || |
Sbjct 10731 TTCCATACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 10790
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || |||||||||||| |
Sbjct 10791 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 10850
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 10851 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 10910
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || | ||||||| | || ||||| || |||||||| ||
Sbjct 10911 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 10961
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794
|||||||| || || | ||||||||| |||||| | || || | || |||||||
Sbjct 10962 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 11019
>seq2
Length=19320864
Score = 114 bits (126), Expect = 4e-21
Identities = 171/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 26193 CCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGAT 26252
|||||| ||||| || || | ||| || || ||| | || | || || || || ||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 26253 GATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCAC 26312
|| |||||||| || || | | ||| || ||||| |||||||||||||| ||||| ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 26313 GGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGAT 26372
||||| ||||||| ||||| || | ||| | | ||| || || | | ||||||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 26373 CATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 26432
||| | || |||||||| || | || || ||||| | || || || | ||||| |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032
Query 26433 TAA 26435
||
Sbjct 8835031 GAA 8835029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151992343772896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |