Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq7 161 1e-34
seq5 113 5e-20
>seq7
Length=24649197
Score = 161 bits (178), Expect = 1e-34
Identities = 356/529 (67%), Gaps = 10/529 (2%)
Strand=Plus/Plus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| || |||||||| || | |||||| ||||| |||||||| ||||| || ||
Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291
| ||| ||||||||||||| ||| || | ||| ||||| | |||||| | ||||| ||
Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAA 21840467
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351
||| ||||||||||| ||||| ||||| | | | |||| || | |||
Sbjct 21840468 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTT----TGAGATC 21840523
Query 37352 AG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410
| |||||||| | | ||| ||||| ||| | ||||| ||| ||||| ||||
Sbjct 21840524 CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTG 21840583
Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470
| |||||| | | | |||| | ||| | || ||||| || | || | |||||
Sbjct 21840584 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 21840643
Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530
|||| ||||| |||||||| || || || || || || || || || | |||||| |
Sbjct 21840644 ACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 21840703
Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590
| | ||||||||| | || | | | | || || ||| || || || |
Sbjct 21840704 AGATCTGAACATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATG 21840763
Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA---ATTTTT 37647
| |||||||| || || || | ||| || || || | ||| || || |||| | ||||
Sbjct 21840764 CGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTT 21840823
Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696
||| || | | |||| || | ||| ||||| || ||||||| ||
Sbjct 21840824 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAA 21840872
>seq5
Length=21221946
Score = 113 bits (124), Expect = 5e-20
Identities = 208/303 (69%), Gaps = 3/303 (1%)
Strand=Plus/Plus
Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456
||| |||||||| || |||||| | | | |||| ||||| | |||||||||||
Sbjct 3397459 AATCGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATC 3397518
Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516
| || | ||||||||| || ||||| ||||||||||| || ||||| ||||| || ||
Sbjct 3397519 GAGAAGGAGACTATACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAA 3397578
Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576
| | || || || | |||||||||| | || | ||| | || || ||
Sbjct 3397579 AGCACGCGCCTCCGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATAC 3397638
Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT- 37635
|| || ||| || || |||||||| || |||| ||| || || || | |||| | |
Sbjct 3397639 GATTCCGTCAGATGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTC 3397698
Query 37636 -TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693
|||| | | |||| ||| || | || | ||||| ||| ||||| ||| |||||||
Sbjct 3397699 GTTGAGATTGTTTTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCA 3397758
Query 37694 AAA 37696
||
Sbjct 3397759 GAA 3397761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592311646843840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |