Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7 161 1e-34 seq5 113 5e-20 >seq7 Length=24649197 Score = 161 bits (178), Expect = 1e-34 Identities = 356/529 (67%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || | |||||| ||||| |||||||| ||||| || || Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 | ||| ||||||||||||| ||| || | ||| ||||| | |||||| | ||||| || Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAA 21840467 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||| ||||||||||| ||||| ||||| | | | |||| || | ||| Sbjct 21840468 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTT----TGAGATC 21840523 Query 37352 AG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | |||||||| | | ||| ||||| ||| | ||||| ||| ||||| |||| Sbjct 21840524 CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTG 21840583 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | |||||| | | | |||| | ||| | || ||||| || | || | ||||| Sbjct 21840584 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 21840643 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| ||||| |||||||| || || || || || || || || || | |||||| | Sbjct 21840644 ACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 21840703 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | ||||||||| | || | | | | || || ||| || || || | Sbjct 21840704 AGATCTGAACATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATG 21840763 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA---ATTTTT 37647 | |||||||| || || || | ||| || || || | ||| || || |||| | |||| Sbjct 21840764 CGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTT 21840823 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| || | | |||| || | ||| ||||| || ||||||| || Sbjct 21840824 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAA 21840872 >seq5 Length=21221946 Score = 113 bits (124), Expect = 5e-20 Identities = 208/303 (69%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| || |||||| | | | |||| ||||| | ||||||||||| Sbjct 3397459 AATCGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATC 3397518 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 | || | ||||||||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 3397519 GAGAAGGAGACTATACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAA 3397578 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 | | || || || | |||||||||| | || | ||| | || || || Sbjct 3397579 AGCACGCGCCTCCGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATAC 3397638 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT- 37635 || || ||| || || |||||||| || |||| ||| || || || | |||| | | Sbjct 3397639 GATTCCGTCAGATGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTC 3397698 Query 37636 -TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693 |||| | | |||| ||| || | || | ||||| ||| ||||| ||| ||||||| Sbjct 3397699 GTTGAGATTGTTTTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCA 3397758 Query 37694 AAA 37696 || Sbjct 3397759 GAA 3397761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311646843840