Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 2e-29
seq6 113 3e-20
seq4 113 3e-20
seq7 89.7 4e-13
seq1 86.0 5e-12
>seq2
Length=19320864
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || ||||||||| || |||||||||| |
Sbjct 9126474 CCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGCT 9126533
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | ||| | || || | ||||||||||||||| || |||| ||||||||||| ||
Sbjct 9126534 AAAGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGAGGG 9126593
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||||||| || ||| | | | || ||||| ||| |||
Sbjct 9126594 ATACCTTCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCAACC 9126653
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || ||||| || | || || ||||||||||||||
Sbjct 9126654 TCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || |||||| || |||||||||||||
Sbjct 9126702 CCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCG 9126761
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| |||| || | ||||||||| ||||| || || | ||| ||||||| ||
Sbjct 9126762 AGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGG 9126821
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || |||||| ||| ||| | | | || ||||| || |||
Sbjct 9126822 ATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACC 9126881
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| ||||| || ||||| || || ||||||||||||||
Sbjct 9126882 TCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || |||||| || |||||||||||||
Sbjct 9215483 CCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCG 9215542
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| |||| || | ||||||||| ||||| || || | ||| ||||||| ||
Sbjct 9215543 AGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGG 9215602
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || |||||| ||| ||| | | | || ||||| || |||
Sbjct 9215603 ATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACC 9215662
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| ||||| || ||||| || || ||||||||||||||
Sbjct 9215663 TCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709
Score = 109 bits (120), Expect = 4e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| ||||| || |||||||||| || | ||
Sbjct 9215036 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGT 9215095
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667
| || || | ||||||||||||||| || || | |||||| || |||||| | |||||
Sbjct 9215096 CCATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATC-CCCTC 9215154
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || || | | | | ||||| ||| ||||||| |||
Sbjct 9215155 CTTGTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAACGT 9215214
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| || || || ||||||||||| ||||| || |||||
Sbjct 9215215 AATGGTCTTGCCTGTCAAAGTTTTCACAAATATTTGCAT 9215253
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || |||||||||| || | | ||| | || ||
Sbjct 9125808 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCTAAAGTCCGACCATCCTCG 9125867
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676
| ||| ||||| || || || |||| |||||| || | ||||| | |||||||||||
Sbjct 9125868 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATC-CCCTCCTTGTCCTG 9125926
Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736
|||||| || || | | | | ||||| ||| ||||||| |||||| || ||
Sbjct 9125927 AATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAACGTAATGGTCTT 9125986
Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||||||||| ||||| || |||||
Sbjct 9125987 GCCTGTCAAAGTTTTCACAAATATTTGCAT 9126016
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || || || || || ||||| |||| | | | |||
Sbjct 9215264 AGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGA 9215323
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667
| || || | ||| ||||| || || || |||| |||||| || | ||||| | || ||
Sbjct 9215324 CCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATC-CCTTC 9215382
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| ||||| ||| ||| | | | || ||||| ||| ||||||| ||
Sbjct 9215383 CTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTGTCTGAGCTCTCAACCTCCAAAGT 9215442
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| || ||||| || | || || ||||||||||||||
Sbjct 9215443 AATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9215481
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || |||||||||| | | | ||| | || ||
Sbjct 9214589 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 9214648
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||| ||||| || || || || | |||||| || | || | ||||||||||| |
Sbjct 9214649 AGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCCTGA 9214708
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | | ||||| ||| ||||||| ||||| || ||
Sbjct 9214709 ATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 9214768
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| || ||||| || |||||
Sbjct 9214769 CCTGTCAAAGTCTTCACAAAGATTTGCAT 9214797
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| ||||| || |||||||||| || | ||
Sbjct 9126255 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGT 9126314
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667
| || || | ||||||||||||||| || || | |||||| || |||||| | |||||
Sbjct 9126315 CCATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATC-CCCTC 9126373
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || || | | | | ||||| ||| | ||||| ||
Sbjct 9126374 CTTGTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAATCTCCAAAGT 9126433
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || ||||| ||||||||
Sbjct 9126434 GATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 9126472
>seq6
Length=25113588
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || |||||| || || ||||| ||||
Sbjct 905420 CCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCA 905479
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| |||| || | ||||||||||||||| || || | |||||| |||| |||
Sbjct 905480 AGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGA 905539
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||||| ||| ||| | | | | ||||| ||| |||
Sbjct 905540 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACC 905599
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| ||||| || || | || || ||||| ||||||||
Sbjct 905600 TCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 905646
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || || ||| || ||||| |||||||||| | | |||
Sbjct 23404180 AGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCCAAAGTTCTG 23404121
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||| ||||| || |||| | ||| || |||| || | |||||
Sbjct 23404120 CCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCT 23404061
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | | || || ||||||||||| ||
Sbjct 23404060 TTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTG 23404001
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| |||||||| || ||||||||||||||
Sbjct 23404000 ATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 23403963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||||||||| || |||||||||| ||| | ||| | || || | ||| || || || ||
Sbjct 10622509 CTCTTTTTGGATGTTGTAATCAGCTAGTGTCCGACCATCCTCAAGCTGTTTCCCAGCGAA 10622450
Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693
|| |||| ||| || |||| ||||| | || |||||||| |||||| || |||
Sbjct 10622449 GATAAGTCTCTGCTGGTCCGGTGGGATC-CCTTCCTTGTCCTGAATCTTAGCCTTGACAT 10622391
Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753
| | | | ||||| ||| ||||||| || || || || || |||| || || |
Sbjct 10622390 TATCAATCGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAGGGTCTTCA 10622331
Query 48754 CAAAAATCTGCAT 48766
| |||||||||||
Sbjct 10622330 CGAAAATCTGCAT 10622318
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || ||||||||||| || || ||| || ||||| ||||| |||| | | |||
Sbjct 22900882 AGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTG 22900823
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| ||||| || |||| | ||| || |||| |||| |||||
Sbjct 22900822 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCT 22900763
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| ||| | | | || || ||||||||||| ||
Sbjct 22900762 TTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTG 22900703
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| ||||| || || || || || |||||
Sbjct 22900702 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||| || || || |||||||| | | | |||
Sbjct 22901110 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGA 22901051
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || ||||| || |||| | ||| || |||| || | || |||
Sbjct 22901050 CCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCC 22900991
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || || | | || ||||| ||||||||||| ||
Sbjct 22900990 TTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTG 22900931
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | ||| || ||||||||||||||
Sbjct 22900930 ATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || || || ||||| |||||||||| || | | |||
Sbjct 905201 AGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCTAAAGTCCGA 905260
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667
| || || | ||| ||||| || || || || | |||||| || | ||||| | || ||
Sbjct 905261 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGGATC-CCTTC 905319
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || ||| | | | | ||||| ||||||||||| ||
Sbjct 905320 CTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGT 905379
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | || || ||||| ||||||||
Sbjct 905380 TATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 905418
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || || || || ||||||||||| | || | |||
Sbjct 8748561 AGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTCCGA 8748620
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667
| || || | ||| || || || || || |||| |||||| || |||||| | || ||
Sbjct 8748621 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATC-CCTTC 8748679
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || ||| | | | | ||||| ||| ||||| | ||
Sbjct 8748680 CTTGTCTTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCGACCTCAAGAGT 8748739
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| |||||||| || | || || ||||||||||||||
Sbjct 8748740 AATGGTTTTTCCGGTAAGTGTCTTCACAAAAATCTGCAT 8748778
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || || || |||||||||||||| | ||| | |||
Sbjct 10622763 AGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCGA 10622704
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667
| || || | ||| ||||| || || || |||| ||| ||||| |||||| | || ||
Sbjct 10622703 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGATCTGGTGGGATC-CCTTC 10622645
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
||||| ||| || || ||| | | | | ||||| ||| ||||||| ||
Sbjct 10622644 TTTGTCCTGAATTTTGGCCTTGACATTATCGATTGTGTCTGAACTCTCAACCTCCAAAGT 10622585
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| |||||||| || | || || ||||| || |||||
Sbjct 10622584 AATGGTTTTTCCGGTAAGGGTCTTCACAAAGATTTGCAT 10622546
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| |||| || ||| | || ||||||||||| ||||| ||
Sbjct 22758832 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTCCAACTGCTTTCCGGCGAA 22758891
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| | ||| ||||||| |||| |||||||| || |||||| || ||
Sbjct 22758892 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCTTGAATCTTGGCCTTCACGTT 22758951
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || || ||||||||| | |||||||| || ||||| | || || ||
Sbjct 22758952 GTCGATAGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTTCCCCGTTAGGGTCTTGAC 22759011
Query 48755 AAAAATCTGCAT 48766
|||||||||||
Sbjct 22759012 GAAAATCTGCAT 22759023
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||| || ||||| ||||| |||| | | |||
Sbjct 22758578 AGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTG 22758637
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | || || |||||||| |||| || ||| || |||| || | |||||
Sbjct 22758638 CCATCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCT 22758697
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| ||| | | | || || ||||||||||| ||
Sbjct 22758698 TTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTG 22758757
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| ||||| || || || || || |||||
Sbjct 22758758 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795
>seq4
Length=23328337
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || |||||| || || ||||| ||||
Sbjct 15771341 CCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCA 15771400
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| |||| || | ||||||||||||||| || || | |||||| |||| |||
Sbjct 15771401 AGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGA 15771460
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||||| ||| ||| | | | | ||||| ||| |||
Sbjct 15771461 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACC 15771520
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| ||||| || || | || || ||||| ||||||||
Sbjct 15771521 TCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 15771567
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || || || ||||| |||||||||| || | | |||
Sbjct 15771122 AGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCTAAAGTCCGA 15771181
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667
| || || | ||| ||||| || || || || | |||||| || | ||||| | || ||
Sbjct 15771182 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGGATC-CCTTC 15771240
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || ||| | | | | ||||| ||||||||||| ||
Sbjct 15771241 CTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGT 15771300
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | || || ||||| ||||||||
Sbjct 15771301 TATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 15771339
>seq7
Length=24649197
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| |||||||| | || | ||| |||| || | |||||||||||||||
Sbjct 18994163 CTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGACCGTCCTCAAGCTGCTTACCGGCAAA 18994222
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| |||| ||| || |||| || | || ||||| || |||||| ||| | |
Sbjct 18994223 GATAAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCTTGAATCTTAGCTTTAAGATT 18994282
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | ||||| ||| ||||||| || || ||||| || || | ||||| ||
Sbjct 18994283 GTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCAGTGAGGGTTTTCAC 18994342
Query 48755 AAAAATCTGCAT 48766
||| ||||||||
Sbjct 18994343 AAAGATCTGCAT 18994354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/196 (70%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| |||||||||||||| | || | | ||| | || || | ||| || ||||||||
Sbjct 18993479 CTCTTTCTGAATATTGTAATCCGCTAAAGTACGACCATCCTCGAGCTGTTTTCCGGCAAA 18993538
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAAC---GCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691
|| || | ||| || ||| ||||| || || ||||| |||||| |||||
Sbjct 18993539 GATTAGCCTCTGCTGGTCC---GGAACTATCCCTTCTTTGTCCTGAATCTTGGCCTTTAC 18993595
Query 48692 AGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751
| | | || || ||| ||||| | || || || || ||||||||||| ||
Sbjct 18993596 GTTGTCAATCGTATCAGAGCTCTCGACCTCAAGTGTGATGGTCTTGCCCGTCAAAGTCTT 18993655
Query 48752 TACAAAAATCTGCATC 48767
|||||||||||||||
Sbjct 18993656 GACAAAAATCTGCATC 18993671
>seq1
Length=33132539
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || || |||||||| | || | | ||| | || || | ||||| ||||||||
Sbjct 29081721 CTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGCTTCCCGGCAAA 29081662
Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693
|| || | ||| || |||| ||||| | || || ||||| |||||| || |||
Sbjct 29081661 GATTAGCCTCTGCTGGTCCGGTGGGATC-CCTTCTTTGTCCTGGATCTTTGCCTTCACAT 29081603
Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753
| | | || || ||||| || | ||| || || |||||||||||||| || |
Sbjct 29081602 TGTCAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTGA 29081543
Query 48754 CAAAAATCTGCATC 48767
|||| |||||||||
Sbjct 29081542 CAAATATCTGCATC 29081529
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||| | || || || ||| ||||| || |||||||| | ||| | |||
Sbjct 29081519 AGACGCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCAAGAGTGCGA 29081460
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || ||||| || |||| |||||| || || || | || |||
Sbjct 29081459 CCATCCTCAAGCTGCTTGCCTGCAAAGATAAGTCTCTGTTGGTCTGTTGGGATCCCTTCC 29081400
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | | || || ||| ||||||| ||
Sbjct 29081399 TTGTCTTGTATCTTGGCCTTCACGTTATCGATTGTGTCCGAGCTCTCAACCTCCAAAGTT 29081340
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| ||||| || | || || || ||||||||||||
Sbjct 29081339 ATCGTCTTTCCGGTTAGGGTCTTGACGAAAATCTGCATC 29081301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380934368696808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |