Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2 104 5e-17 >seq2 Length=19320864 Score = 104 bits (114), Expect = 5e-17 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| || |||||||| | |||||||| || || || || || | || || Sbjct 16233342 AGCAGGGAAGCTTGATCCTGTGATTGGTCGGGACGAGGAGATTAGAAGAGTTG-TTAGGA 16233284 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 ||||||| | | ||| ||||| ||| || | | |||| || ||||| |||||||||| Sbjct 16233283 TTCTTTCGAGGAGAACAAAAAACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAA 16233224 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 || | ||||| || ||||| ||| | || | || || ||||| || | | | | Sbjct 16233223 CAGCTGTGGTTGAAGGTTTAGCGCAAAGGATTGTGAAAGGAGATGTCCCCAACAGTCTTA 16233164 Query 150486 AAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGT 150544 |||| ||| ||| |||||||| | ||||||||||| ||||||| ||||||| || Sbjct 16233163 CTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACCGA 16233105 Query 150545 GGTGAATTCGAAGAA 150559 || || || |||||| Sbjct 16233104 GGAGAGTTTGAAGAA 16233090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147580166362608