Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 5e-17
>seq2
Length=19320864
Score = 104 bits (114), Expect = 5e-17
Identities = 179/255 (70%), Gaps = 4/255 (2%)
Strand=Plus/Minus
Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365
|| ||| || |||||||| | |||||||| || || || || || | || ||
Sbjct 16233342 AGCAGGGAAGCTTGATCCTGTGATTGGTCGGGACGAGGAGATTAGAAGAGTTG-TTAGGA 16233284
Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425
||||||| | | ||| ||||| ||| || | | |||| || ||||| ||||||||||
Sbjct 16233283 TTCTTTCGAGGAGAACAAAAAACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAA 16233224
Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485
|| | ||||| || ||||| ||| | || | || || ||||| || | | | |
Sbjct 16233223 CAGCTGTGGTTGAAGGTTTAGCGCAAAGGATTGTGAAAGGAGATGTCCCCAACAGTCTTA 16233164
Query 150486 AAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGT 150544
|||| ||| ||| |||||||| | ||||||||||| ||||||| ||||||| ||
Sbjct 16233163 CTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACCGA 16233105
Query 150545 GGTGAATTCGAAGAA 150559
|| || || ||||||
Sbjct 16233104 GGAGAGTTTGAAGAA 16233090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147580166362608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |