Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq696 596 2e-165
seq74 228 9e-55
seq2 123 3e-23
>seq696
Length=154923
Score = 596 bits (660), Expect = 2e-165
Identities = 734/999 (73%), Gaps = 18/999 (2%)
Strand=Plus/Minus
Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561
||||||||| | ||| ||| || || | || | || ||||| ||||| ||||||
Sbjct 1367 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1308
Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618
|||||| ||| | | ||| |||| | || || || ||||||||||| || |||
Sbjct 1307 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251
Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678
||||| ||||| |||||||| | ||||||||| | || || ||||| || || |||||
Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191
Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738
|| || || ||||| | |||||| ||| ||||||||| | || || || || |||
Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131
Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798
|||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | ||
Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071
Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855
| ||||| | | || | ||| | | | |||||| ||||||||||| || |
Sbjct 1070 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1014
Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915
|| | ||||||||||||||||| |||||||| || || || || | || ||
Sbjct 1013 CGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 954
Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975
||||| |||||| ||||||| | ||||| || ||| ||||| | |||||||| ||
Sbjct 953 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 894
Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035
|| ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||||
Sbjct 893 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 834
Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095
|| || || ||| | || || || ||||||||||| || || || ||||||||||||||
Sbjct 833 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 774
Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155
||||| | || |||||| | | ||||| ||||| || || | || || || |
Sbjct 773 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 714
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 713 GGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 654
Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275
|| || ||||||||||| ||||| ||||||||| || ||||| | || |||||| |
Sbjct 653 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 594
Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335
|| || | || || || | || ||||| ||||| | ||| | |||||||| |||
Sbjct 593 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 534
Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392
||||| || |||||||| ||||||||||| || ||||| ||| || || |||
Sbjct 533 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATT 477
Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452
||||||||| ||||| ||||| | || |||||||||||||||||||| || |||
Sbjct 476 AATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 417
Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491
||||||||||||||||| || ||||| ||||||| ||||
Sbjct 416 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 378
>seq74
Length=21493
Score = 228 bits (252), Expect = 9e-55
Identities = 254/339 (75%), Gaps = 15/339 (4%)
Strand=Plus/Minus
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| | ||||| ||||||||| | |||||||||||||| ||||||||||| || |||
Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944
Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275
|| || |||||||||| ||||||||| || ||||| | || |||||| |
Sbjct 10943 GGCCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893
Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335
|| || | || || || | || ||||| ||||| | ||| | |||||||| |||
Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833
Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATT 163392
||||| || |||||||| ||||||||||| || ||||| ||| || || |||
Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGT---GTTATT 10776
Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452
||||||||| ||||| ||||| | | ||||||||||||||||||| || |||
Sbjct 10775 AATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGT 10716
Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491
||||||||||||||||| || ||||| ||||||| ||||
Sbjct 10715 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10677
>seq2
Length=19320864
Score = 123 bits (136), Expect = 3e-23
Identities = 174/243 (72%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561
||||||||| | ||| ||| || || | || | || ||||| ||||| ||||||
Sbjct 8835032 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 8835091
Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618
|||||| ||| | | ||| |||| | || | || ||||||||||| || |||
Sbjct 8835092 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCT 8835148
Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678
||||| ||||| |||||||| | ||||||||| | || || ||||| || || |||||
Sbjct 8835149 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 8835208
Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738
|| || || ||||| | |||||| ||| ||||||||| | || || || || |||
Sbjct 8835209 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 8835268
Query 162739 TGG 162741
|||
Sbjct 8835269 TGG 8835271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553079988162240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |