Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq696 596 2e-165 seq74 228 9e-55 seq2 123 3e-23 >seq696 Length=154923 Score = 596 bits (660), Expect = 2e-165 Identities = 734/999 (73%), Gaps = 18/999 (2%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1367 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1308 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || || || ||||||||||| || ||| Sbjct 1307 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| || || ||||| Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||||||| | || || || || ||| Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 1070 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1014 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || | ||||||||||||||||| |||||||| || || || || | || || Sbjct 1013 CGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 954 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| ||||||| | ||||| || ||| ||||| | |||||||| || Sbjct 953 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 894 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||||| Sbjct 893 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 834 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || |||||||||||||| Sbjct 833 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 774 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 773 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 714 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 713 GGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 654 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | Sbjct 653 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 594 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 593 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 534 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392 ||||| || |||||||| ||||||||||| || ||||| ||| || || ||| Sbjct 533 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATT 477 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| ||||| ||||| | || |||||||||||||||||||| || ||| Sbjct 476 AATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 417 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||| || ||||| ||||||| |||| Sbjct 416 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 378 >seq74 Length=21493 Score = 228 bits (252), Expect = 9e-55 Identities = 254/339 (75%), Gaps = 15/339 (4%) Strand=Plus/Minus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||| | |||||||||||||| ||||||||||| || ||| Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || |||||||||| ||||||||| || ||||| | || |||||| | Sbjct 10943 GGCCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATT 163392 ||||| || |||||||| ||||||||||| || ||||| ||| || || ||| Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGT---GTTATT 10776 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| ||||| ||||| | | ||||||||||||||||||| || ||| Sbjct 10775 AATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGT 10716 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||| || ||||| ||||||| |||| Sbjct 10715 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10677 >seq2 Length=19320864 Score = 123 bits (136), Expect = 3e-23 Identities = 174/243 (72%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 8835032 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 8835091 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || | || ||||||||||| || ||| Sbjct 8835092 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCT 8835148 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| || || ||||| Sbjct 8835149 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 8835208 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||||||| | || || || || ||| Sbjct 8835209 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 8835268 Query 162739 TGG 162741 ||| Sbjct 8835269 TGG 8835271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553079988162240