Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 6e-22
seq5 100 5e-16
>seq7
Length=24649197
Score = 120 bits (132), Expect = 6e-22
Identities = 187/264 (71%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484
||||||||||| || | |||||| || ||||| ||||| ||||||||||| | || ||
Sbjct 21840643 TACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 21840702
Query 48485 AACACCTGCACTTCTGTGGAGAATC-TCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543
| | ||| || || | ||||| || || |||||||| || || || |||||
Sbjct 21840703 GAGATCTGAACATCGGACATGAATCGGGTCGAG-AGATTCTCCAGAACGATTCCGTCTGA 21840761
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603
|| ||||||||||| ||||| ||||| | ||| || || |||| || || || | ||
Sbjct 21840762 TGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTT 21840821
Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660
|||| | | ||||| || || |||||||| | ||||||||||||||
Sbjct 21840822 TTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTC 21840881
Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684
||||| |||||||| |||| ||
Sbjct 21840882 GGCTTTCTTGTACATCTCCCAGAT 21840905
>seq5
Length=21221946
Score = 100 bits (110), Expect = 5e-16
Identities = 189/275 (69%), Gaps = 5/275 (2%)
Strand=Plus/Plus
Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484
|||||||| ||||| | ||| || || ||||||||||| |||||||| || | |||||
Sbjct 3397532 TACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCC 3397591
Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543
| || || || || | ||||| ||| |||||||| || || || || ||
Sbjct 3397592 GAGACTTGAACATCGGACATGAATC-GAGAAGCGAGATTCTCTAATACGATTCCGTCAGA 3397650
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603
|| || ||||| || ||||||||||| | ||| || || || || | ||||| ||
Sbjct 3397651 TGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTT 3397710
Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660
|||| | | ||| | || || |||||||| | ||||||||||| ||
Sbjct 3397711 TTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTC 3397770
Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695
|||||||||||||| |||| || | || ||||
Sbjct 3397771 GGCTTTTTTGTACATTTCCCAGATCTGTGGGTAGT 3397805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931524695664640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |