Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 120 6e-22 seq5 100 5e-16 >seq7 Length=24649197 Score = 120 bits (132), Expect = 6e-22 Identities = 187/264 (71%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||||| || | |||||| || ||||| ||||| ||||||||||| | || || Sbjct 21840643 TACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 21840702 Query 48485 AACACCTGCACTTCTGTGGAGAATC-TCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| || || | ||||| || || |||||||| || || || ||||| Sbjct 21840703 GAGATCTGAACATCGGACATGAATCGGGTCGAG-AGATTCTCCAGAACGATTCCGTCTGA 21840761 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| ||||| ||||| | ||| || || |||| || || || | || Sbjct 21840762 TGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTT 21840821 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||||| || || |||||||| | |||||||||||||| Sbjct 21840822 TTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTC 21840881 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 ||||| |||||||| |||| || Sbjct 21840882 GGCTTTCTTGTACATCTCCCAGAT 21840905 >seq5 Length=21221946 Score = 100 bits (110), Expect = 5e-16 Identities = 189/275 (69%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| ||||| | ||| || || ||||||||||| |||||||| || | ||||| Sbjct 3397532 TACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCC 3397591 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 | || || || || | ||||| ||| |||||||| || || || || || Sbjct 3397592 GAGACTTGAACATCGGACATGAATC-GAGAAGCGAGATTCTCTAATACGATTCCGTCAGA 3397650 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || ||||| || ||||||||||| | ||| || || || || | ||||| || Sbjct 3397651 TGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTT 3397710 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||| | || || |||||||| | ||||||||||| || Sbjct 3397711 TTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTC 3397770 Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 |||||||||||||| |||| || | || |||| Sbjct 3397771 GGCTTTTTTGTACATTTCCCAGATCTGTGGGTAGT 3397805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524695664640