Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq696 86.0 1e-11 seq3 86.0 1e-11 seq2 86.0 1e-11 >seq696 Length=154923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 29848 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 29790 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 29789 CCCCGTCAGTCC 29778 >seq3 Length=24464547 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 4243856 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 4243798 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 4243797 CCCCGTCAGTCC 4243786 >seq2 Length=19320864 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 8806554 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 8806612 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 8806613 CCCCGTCAGTCC 8806624 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 9131930 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 9131872 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 9131871 CCCCGTCAGTCC 9131860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777625234601600