Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq7 84.2 2e-11 seq1 82.4 6e-11 >seq7 Length=24649197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || | |||||||||| ||| || ||| Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || || || || | | | || | || || Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAA-GATAAGGAAGAAATCCCTGCGGACCA 18994008 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||||||||| || ||||| ||| | || ||| | ||| | || ||||| || Sbjct 18994007 GCAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAA 18993948 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || |||||||| ||||| || |||| Sbjct 18993947 CATCCAGAAAGAATCAACTCTCCATTTGGT 18993918 >seq1 Length=33132539 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| | || || | || ||||||||||||||| ||| || |||| Sbjct 29080614 ATGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 29080673 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | || || ||| ||||| || ||| | || |||||| Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| ||||| || || ||||| | || ||| | ||| | || ||||| ||| Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 29080793 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 29080794 ATCCAAAAAGAATCAACTCTCCA 29080816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425401191503784