Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq7 84.2 2e-11
seq1 82.4 6e-11
>seq7
Length=24649197
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| ||||| | || || | |||||||||| ||| || |||
Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || | || || || | || || || || | | | || | || ||
Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAA-GATAAGGAAGAAATCCCTGCGGACCA 18994008
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|||||||||||||| || ||||| ||| | || ||| | ||| | || ||||| ||
Sbjct 18994007 GCAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAA 18993948
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
||| || |||||||| ||||| || ||||
Sbjct 18993947 CATCCAGAAAGAATCAACTCTCCATTTGGT 18993918
>seq1
Length=33132539
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| | || || | || ||||||||||||||| ||| || ||||
Sbjct 29080614 ATGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 29080673
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | || || ||| ||||| || ||| | || ||||||
Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||||| ||||| || || ||||| | || ||| | ||| | || ||||| |||
Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 29080793
Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756
|| ||||||||||| ||||| ||
Sbjct 29080794 ATCCAAAAAGAATCAACTCTCCA 29080816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425401191503784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |