Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq696 518 1e-142
seq74 152 2e-32
seq2 132 1e-26
>seq696
Length=154923
Score = 518 bits (574), Expect = 1e-142
Identities = 710/987 (72%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||||||
Sbjct 387 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 446
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || ||||| | | || | ||
Sbjct 447 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 506
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || ||||||||||| || || | || ||||
Sbjct 507 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 566
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 567 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 626
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
|||||||| |||||||| | || ||||| || || ||||| || ||||| || || ||
Sbjct 627 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 686
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
||||||||||| || ||| | || || | || ||| ||| || || ||||| ||
Sbjct 687 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 746
Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253
|| | ||||| || | || ||||||||| || | | || ||||||||
Sbjct 747 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATAC 806
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
|| || ||||| | ||| || || || |||||||| || ||||| || || ||||||||
Sbjct 807 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 866
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| ||| || ||||||||||| || || ||||||||||||||||| ||||| || ||
Sbjct 867 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 926
Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430
|||| ||||| | | ||||| || || || |||||||| || || || ||||| ||
Sbjct 927 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 983
Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490
||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||
Sbjct 984 AACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1043
Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550
| || | || | | |||||| | ||||| |||| ||| || || ||||| ||||
Sbjct 1044 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAG 1103
Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610
||| || || | || ||||||||||||||| ||||| || || | ||| || || |||
Sbjct 1104 CCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGA 1163
Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670
| || | || || || || || || |||||||| || || | | ||| || |||||
Sbjct 1164 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1223
Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730
|||||||||||||| || || || ||||||||||||| ||||| || | ||| | |
Sbjct 1224 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGA 1283
Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790
|| |||||| || | | ||||||||| | || |||||||| || | ||| || |||||
Sbjct 1284 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1343
Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817
| || || || | ||||| ||| ||
Sbjct 1344 TTCAGTGCTGGTTATCCAGTTACAGAA 1370
>seq74
Length=21493
Score = 152 bits (168), Expect = 2e-32
Identities = 229/327 (70%), Gaps = 9/327 (3%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||| |||
Sbjct 10686 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTT 10745
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
|| | ||| | | |||||||| ||| | || | ||| | | || | ||
Sbjct 10746 AGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGA 10805
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || |||||||||||| || || | || ||||
Sbjct 10806 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 10865
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 10866 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 10925
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
| ||||||| | || ||||| || |||||||| || ||||| || || ||
Sbjct 10926 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 10976
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCC 18160
| ||||||||| || ||| | || ||
Sbjct 10977 TTATTCTTCTTGACCGAATCTGTAACC 11003
>seq2
Length=19320864
Score = 132 bits (146), Expect = 1e-26
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 18575 CCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATAT 18634
|||||| ||||| || || | ||| || || ||| | || | || || || || ||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 18635 GATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAAC 18694
|| |||||||| || || | | ||| || ||||| |||||||||||||| || || ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 18695 GGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGAT 18754
||||||||||||| ||||| || | ||| | | || |||||| || | | ||||||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 18755 CATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACA 18814
||| | || |||||||| || | ||| || ||||| | || || || | ||||| |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032
Query 18815 TAA 18817
||
Sbjct 8835031 GAA 8835029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151317149353424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |