Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq696 544 2e-150
seq74 201 3e-47
>seq696
Length=154923
Score = 544 bits (602), Expect = 2e-150
Identities = 719/995 (72%), Gaps = 2/995 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 377 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 436
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 437 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 496
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 497 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 556
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 557 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 616
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || ||||||||||||||||| | || |||||||| ||||||||||| ||||
Sbjct 617 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 676
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 677 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 736
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 737 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGC 796
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 797 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 856
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 857 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 916
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| |
Sbjct 917 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 976
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || ||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 977 AATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1036
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||| ||||
Sbjct 1037 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 1096
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239
|||| ||||||||||||| | ||||||||||| || ||||| || || | || || |
Sbjct 1097 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 1156
Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299
| | | |||| | ||| || || || || ||||| || || | || || ||||
Sbjct 1157 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 1216
Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359
|| ||||| || || ||||| || || || || || || ||| || ||||||||||
Sbjct 1217 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1276
Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| | || |||| ||| ||| | || ||||| | || || |||||||| | |||
Sbjct 1277 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1335
Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|||||||| | ||| ||| | |||| ||| ||
Sbjct 1336 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370
>seq74
Length=21493
Score = 201 bits (222), Expect = 3e-47
Identities = 246/337 (73%), Gaps = 9/337 (3%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 10676 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 10735
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||| ||| | |||||||| ||| |||||||| || || || || | || | | |
Sbjct 10736 TACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTAT 10795
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| || | || |
Sbjct 10796 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 10855
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 10856 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 10915
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || | ||||||| | || |||||||| || |||||||| ||||
Sbjct 10916 AATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 10966
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
| |||||||| | ||| |||||||| || |||||||
Sbjct 10967 TGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACC 11003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146206791590880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |