Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq696 544 2e-150 seq74 201 3e-47 >seq696 Length=154923 Score = 544 bits (602), Expect = 2e-150 Identities = 719/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 377 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 436 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 437 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 496 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| ||| | || | Sbjct 497 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 556 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 557 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 616 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || ||||||||||||||||| | || |||||||| ||||||||||| |||| Sbjct 617 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 676 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| ||||| || || ||||||| | || || | | ||| | Sbjct 677 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 736 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| | ||| ||||||||| || | | Sbjct 737 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGC 796 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 797 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 856 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 857 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 916 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| | Sbjct 917 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 976 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || ||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 977 AATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1036 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | ||||| |||| Sbjct 1037 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 1096 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| || ||||| || || | || || | Sbjct 1097 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 1156 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| || || || || ||||| || || | || || |||| Sbjct 1157 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 1216 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 1217 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1276 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 1277 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1335 Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 |||||||| | ||| ||| | |||| ||| || Sbjct 1336 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370 >seq74 Length=21493 Score = 201 bits (222), Expect = 3e-47 Identities = 246/337 (73%), Gaps = 9/337 (3%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 10676 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 10735 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||| ||| | |||||||| ||| |||||||| || || || || | || | | | Sbjct 10736 TACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTAT 10795 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| || | || | Sbjct 10796 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 10855 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 10856 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 10915 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || | ||||||| | || |||||||| || |||||||| |||| Sbjct 10916 AATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 10966 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 | |||||||| | ||| |||||||| || ||||||| Sbjct 10967 TGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACC 11003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206791590880