Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq4 143 3e-29 seq8 116 4e-21 seq7 87.8 2e-12 >seq1 Length=33132539 Score = 147 bits (162), Expect = 3e-30 Identities = 251/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || | ||||||| ||||||| ||| Sbjct 2327433 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCCAAAGGT 2327374 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||||| || || |||||| || ||| Sbjct 2327373 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTGGCAAAAGCCATTGCTGGT 2327314 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 2327313 GAAGCCGGTGTGCCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 2327256 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| ||| || |||||||| || ||| ||| |||||| ||||| | Sbjct 2327255 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCA 2327196 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| ||| | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 2327195 TTGTTTTCGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 2327139 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 2327138 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 2327079 Query 175592 A 175592 | Sbjct 2327078 A 2327078 Score = 123 bits (136), Expect = 3e-23 Identities = 198/280 (71%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||| ||||| || | || | || || || || || || || Sbjct 26184406 GCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAGGCAGGAGTACCGTT 26184347 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| | | ||||||||| | ||||| ||||| ||||| || || Sbjct 26184346 CTTCTCTTGCGCGGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTTGGTGCATCTAGAGT 26184287 Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | | ||| | || || | || | ||| || || |||||||| ||||||||||||| Sbjct 26184286 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCA-CCTTGTATTGTATTCATTGATGAGA 26184228 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || ||||| | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 26184227 TTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 26184170 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| | | || ||||||||||| ||| Sbjct 26184169 ACAGACTATTAATCAGTTGTTGACGGAGATGGATGGATTT 26184130 >seq4 Length=23328337 Score = 143 bits (158), Expect = 3e-29 Identities = 281/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||||| || ||||||||||||||| ||| Sbjct 14548425 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATCCCAAAAGGT 14548484 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 14548485 GTTCTCCTTATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 14548544 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||||||| Sbjct 14548545 GAAGCTGGTGTACCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 14548604 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| || || || || ||| Sbjct 14548605 GTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAAGAGAACGCTCCTTGCATT 14548664 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 |||||| | ||||| || ||||| || || | |||| | | | || |||| | Sbjct 14548665 GTCTTCGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 14548721 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 14548722 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 14548781 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | || || |||||| Sbjct 14548782 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 14548835 >seq8 Length=22951293 Score = 116 bits (128), Expect = 4e-21 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || | || |||| | || || ||| | || || ||| Sbjct 6867865 CCGGGTACGGGGAAGACACTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTC 6867806 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||||||| | ||||||||||||||||| || ||| Sbjct 6867805 TTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTT 6867746 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 6867745 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCT-CCTTGTATTGTGTTTATTGATGAGAT 6867687 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | |||| | | ||||| ||| | | ||||| ||||||||| Sbjct 6867686 TGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGTGGG--AATGATGAGAGAGAA 6867629 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| || | || ||||||||||| ||| Sbjct 6867628 CAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTT 6867590 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803 ||| || ||| | || || |||| | |||| | ||||| ||||||||||||||||| Sbjct 22813997 AGTGATTTTCCTAGTCACGAAGTTCTCGCCTCTGCGAGGTGACTCGTGGTTGAAGAGGAT 22814056 Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGC 177860 |||| |||||| |||| ||| |||| ||||||||| ||||| | ||| ||||| Sbjct 22814057 TCCGTTGCAGGCGTACAGACCGTAGGCCTCTCGGTAA---TTGACAGTGTACCAATGAGC 22814113 Query 177861 GGCCAATTTGGAG 177873 || |||||||| Sbjct 22814114 AGCGCATTTGGAG 22814126 >seq7 Length=24649197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 || || ||||| || ||| || | || ||||||||||||| |||||||| |||| Sbjct 508681 ACTGTCTGGGAGATTAAGCAGAGAACAGTGGTTGACATGGCCGCTGATCGTGGATGCTTT 508740 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876 || |||||||| |||||| | ||| || |||||||| |||| | | || ||| || Sbjct 508741 ATAGATCAAAGCCAAAGTTTAAATATACACATGGAAAAGCCAAACTTTGCAAAACTCACT 508800 Query 76877 TCTATGCATATGTACGCGTGGAAACAGG 76904 ||| | || | ||||| |||||| ||| Sbjct 508801 TCTTTACACTTCTACGCTTGGAAAAAGG 508828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564409844480