Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 147 3e-30
seq4 143 3e-29
seq8 116 4e-21
seq7 87.8 2e-12
>seq1
Length=33132539
Score = 147 bits (162), Expect = 3e-30
Identities = 251/361 (70%), Gaps = 10/361 (3%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| | || ||||| | || | ||||||| ||||||| |||
Sbjct 2327433 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCCAAAGGT 2327374
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || | ||| || ||||| || || ||||| || || |||||| || |||
Sbjct 2327373 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTGGCAAAAGCCATTGCTGGT 2327314
Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| |
Sbjct 2327313 GAAGCCGGTGTGCCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 2327256
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| ||| || |||||||| || ||| ||| |||||| ||||| |
Sbjct 2327255 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCA 2327196
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531
|||| ||| | ||||| || ||||| || || | |||| | | |||| ||||
Sbjct 2327195 TTGTTTTCGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 2327139
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
|| ||||| || |||||||| || ||||||| || || || ||||||||||| ||||
Sbjct 2327138 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 2327079
Query 175592 A 175592
|
Sbjct 2327078 A 2327078
Score = 123 bits (136), Expect = 3e-23
Identities = 198/280 (71%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373
||| |||||||| ||||| ||||| || | || | || || || || || || ||
Sbjct 26184406 GCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAGGCAGGAGTACCGTT 26184347
Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || ||| | ||| | | ||||||||| | ||||| ||||| ||||| || ||
Sbjct 26184346 CTTCTCTTGCGCGGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTTGGTGCATCTAGAGT 26184287
Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
| | ||| | || || | || | ||| || || |||||||| |||||||||||||
Sbjct 26184286 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCA-CCTTGTATTGTATTCATTGATGAGA 26184228
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550
|||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||||
Sbjct 26184227 TTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 26184170
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||| || |||||||| | | || ||||||||||| |||
Sbjct 26184169 ACAGACTATTAATCAGTTGTTGACGGAGATGGATGGATTT 26184130
>seq4
Length=23328337
Score = 143 bits (158), Expect = 3e-29
Identities = 281/414 (68%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| |||||||||||| || ||||||||||||||| |||
Sbjct 14548425 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATCCCAAAAGGT 14548484
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || ||| || ||||| || || ||||| | || |||||| || |||
Sbjct 14548485 GTTCTCCTTATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 14548544
Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416
||| | ||| || ||| || ||||| | | ||||| |||||||||||||||
Sbjct 14548545 GAAGCTGGTGTACCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 14548604
Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476
|| |||||| ||| || || ||||| || | | ||| || || || || |||
Sbjct 14548605 GTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAAGAGAACGCTCCTTGCATT 14548664
Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533
|||||| | ||||| || ||||| || || | |||| | | | || |||| |
Sbjct 14548665 GTCTTCGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 14548721
Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593
| ||||| || |||||||| || | ||||| || || || ||||||||||| |||||
Sbjct 14548722 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 14548781
Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
| | ||||| || | || |||| || || ||| | | || || ||||||
Sbjct 14548782 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 14548835
>seq8
Length=22951293
Score = 116 bits (128), Expect = 4e-21
Identities = 196/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| |||||||| ||||| || | || |||| | || || ||| | || || |||
Sbjct 6867865 CCGGGTACGGGGAAGACACTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTC 6867806
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
| ||| |||| | | ||||||||| | ||||||||||||||||| || |||
Sbjct 6867805 TTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTT 6867746
Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| ||| | ||||| | || | ||| | || |||||||| || |||||||||||
Sbjct 6867745 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCT-CCTTGTATTGTGTTTATTGATGAGAT 6867687
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551
|||||| ||||| | |||| | | ||||| ||| | | ||||| |||||||||
Sbjct 6867686 TGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGTGGG--AATGATGAGAGAGAA 6867629
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|| || |||||||| || | || ||||||||||| |||
Sbjct 6867628 CAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTT 6867590
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/133 (74%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803
||| || ||| | || || |||| | |||| | ||||| |||||||||||||||||
Sbjct 22813997 AGTGATTTTCCTAGTCACGAAGTTCTCGCCTCTGCGAGGTGACTCGTGGTTGAAGAGGAT 22814056
Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGC 177860
|||| |||||| |||| ||| |||| ||||||||| ||||| | ||| |||||
Sbjct 22814057 TCCGTTGCAGGCGTACAGACCGTAGGCCTCTCGGTAA---TTGACAGTGTACCAATGAGC 22814113
Query 177861 GGCCAATTTGGAG 177873
|| ||||||||
Sbjct 22814114 AGCGCATTTGGAG 22814126
>seq7
Length=24649197
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816
|| || ||||| || ||| || | || ||||||||||||| |||||||| ||||
Sbjct 508681 ACTGTCTGGGAGATTAAGCAGAGAACAGTGGTTGACATGGCCGCTGATCGTGGATGCTTT 508740
Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876
|| |||||||| |||||| | ||| || |||||||| |||| | | || ||| ||
Sbjct 508741 ATAGATCAAAGCCAAAGTTTAAATATACACATGGAAAAGCCAAACTTTGCAAAACTCACT 508800
Query 76877 TCTATGCATATGTACGCGTGGAAACAGG 76904
||| | || | ||||| |||||| |||
Sbjct 508801 TCTTTACACTTCTACGCTTGGAAAAAGG 508828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596564409844480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |