Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq696 506 3e-138
seq74 187 3e-42
seq2 107 2e-18
>seq696
Length=154923
Score = 506 bits (560), Expect = 3e-138
Identities = 709/990 (72%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 375 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 434
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
|||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 435 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 492
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| || | ||||
Sbjct 493 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 552
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 553 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 612
Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174
| | ||||| |||| | ||||| |||||||| |||| ||||| || || ||||||||
Sbjct 613 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 671
Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234
||||| || || || ||||||||||| || || | ||||| | || ||| || |
Sbjct 672 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 731
Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294
||| || || || ||||| | | ||| || || || ||||| ||||||||||| || ||
Sbjct 732 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 791
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||
Sbjct 792 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 851
Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414
||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 852 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 911
Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474
||| || |||||||||| |||||| | ||||| || || ||||| | || ||
Sbjct 912 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 971
Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534
||| |||||| || ||||| || | |||||| | ||| | | |||||||
Sbjct 972 AGCTGAATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1031
Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594
| |||||| ||| || | |||| | ||||| | | || | | ||| |||||
Sbjct 1032 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1091
Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654
||||| || | ||| ||||| | | ||||||||||| || || || || || || ||
Sbjct 1092 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 1151
Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714
|||||| |||| |||| | ||||| || || || |||||||| || | | ||
Sbjct 1152 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1211
Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774
|| | |||||||||||||||||| || ||||| || || ||||||||||| ||||| |
Sbjct 1212 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1271
Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834
||||| | || || | || ||| ||| ||||| | ||| |||||||| || |
Sbjct 1272 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1331
Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
||||| | ||| | || || || | |||
Sbjct 1332 GTAAAGACGGTTTTCAGTGCTGGTTATCCA 1361
>seq74
Length=21493
Score = 187 bits (206), Expect = 3e-42
Identities = 269/377 (71%), Gaps = 13/377 (3%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 10674 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 10733
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
|||||| ||||| | | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 10734 CATACCAAAGTTAGTACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 10791
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| |||| ||||
Sbjct 10792 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 10851
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 10852 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 10911
Query 8116 CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175
| | ||||| || || ||||||| |||| ||||| || |||||||||||
Sbjct 10912 CGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 10962
Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235
||||| || || || | |||||||||||| || | ||||| | || ||| || | |
Sbjct 10963 ACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTT 11022
Query 8236 TCAGTTGTCTCTCTGAT 8252
|| | || || |||||
Sbjct 11023 TCTATGGTTTCCCTGAT 11039
>seq2
Length=19320864
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 8631 CCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGAT 8690
||| || || || || || || |||||||| |||| |||| | ||||| || ||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 8691 GATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGAC 8750
|| |||||||| || | | || || | |||||||||||||||||| || ||||| ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 8751 AGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAAT 8810
|| ||||||||||| ||||| | | ||| | || || | || ||| ||| ||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 8811 CATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
||| | ||| |||||||| || | ||||| | ||| | || || || | |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 8835038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615857041997120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |