Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq696 581 9e-162
seq74 199 1e-46
seq2 161 3e-35
seq5 80.6 8e-11
>seq696
Length=154923
Score = 581 bits (644), Expect = 9e-162
Identities = 735/1005 (73%), Gaps = 4/1005 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | || ||| | ||||||||||| |||| ||||||
Sbjct 1379 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1320
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398
||||| ||||||| |||| || | | | || || || ||||||| |||| |||||
Sbjct 1319 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 1261
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1260 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1201
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
|| ||||| || || || |||||| | | |||| | || ||||| | |||||
Sbjct 1200 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 1141
Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578
|| ||||||||||||| || |||| |||||||| ||||| || || |||||| |
Sbjct 1140 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 1081
Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638
|| | || | ||||| | | ||| | | ||| |||| || || ||||||||
Sbjct 1080 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1021
Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698
| | ||| || || ||| | || ||||| ||||| || || || ||||| || ||
Sbjct 1020 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGC 961
Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758
|||||||| || ||| | |||||||| |||| || || |||||| ||||| |||||
Sbjct 960 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 901
Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818
||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||||||
Sbjct 900 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 841
Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878
|||||| || || || ||| | ||||| || || ||||| || || || | || ||
Sbjct 840 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 781
Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938
|||||||||| | || || ||| | | | | ||||| || ||||| |||
Sbjct 780 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 721
Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998
||| | || |||| ||||| ||||| || || ||||| |||||||| || || || ||
Sbjct 720 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 661
Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057
||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || |
Sbjct 660 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 602
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| || || || |||||||| ||| || | || | |||||||
Sbjct 601 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 542
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | ||
Sbjct 541 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 482
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || |||||||||||||||| | || ||||| |||||||| | || || ||||| |
Sbjct 481 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 422
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
| || ||||| || |||||||| || || || || | || ||||
Sbjct 421 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 377
>seq74
Length=21493
Score = 199 bits (220), Expect = 1e-46
Identities = 250/343 (73%), Gaps = 9/343 (3%)
Strand=Plus/Minus
Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999
||| | || |||| ||||||||||| || | ||||| |||||||| || || ||||||
Sbjct 11009 AATGAAGGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGT 10950
Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTC 43059
|| ||||| || | ||||||| || || || ||| ||| ||||| || |||
Sbjct 10949 TATTTTGGCCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTC 10899
Query 43060 TTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATG 43119
|| | || |||||||| || || || |||||||| ||| || | || | || ||||||
Sbjct 10898 TTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 10839
Query 43120 GCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTC 43179
|| || ||| | |||||||| || || ||||||||| | ||||||| ||| | |||
Sbjct 10838 GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTT 10779
Query 43180 ATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAG 43239
|| |||||||||||||||| | || ||| | ||| |||| | || || ||||| ||
Sbjct 10778 ATTAATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAA 10719
Query 43240 CGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
|| ||||| || |||||||| || || || || | || ||||
Sbjct 10718 CGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 10676
>seq2
Length=19320864
Score = 161 bits (178), Expect = 3e-35
Identities = 189/253 (75%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | || ||| | ||||||||||| |||| ||||||
Sbjct 8835020 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 8835079
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398
||||| ||||||| |||| || | | | || || || |||| || |||| |||||
Sbjct 8835080 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCAT 8835138
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 8835139 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 8835198
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
|| ||||| || || || |||||| | | |||| | || ||||| | |||||
Sbjct 8835199 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 8835258
Query 42519 GTATTCGATCTGG 42531
|| ||||||||
Sbjct 8835259 TTACCCGATCTGG 8835271
>seq5
Length=21221946
Score = 80.6 bits (88), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 42394 TTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTT 42453
||||||||||| ||||| ||||| |||||| |||| ||||| ||| ||||| ||||||
Sbjct 6509013 TTCATTGCTGCTCCTCCAGTAGATATTGAT---ATTCATGAACATGTTTCTGGATCTCTT 6509069
Query 42454 CTGTATGGCAACAACATCAT 42473
|| || | |||||||||||
Sbjct 6509070 CTTTACGTAAACAACATCAT 6509089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143531613701408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |