Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq696 581 9e-162 seq74 199 1e-46 seq2 161 3e-35 seq5 80.6 8e-11 >seq696 Length=154923 Score = 581 bits (644), Expect = 9e-162 Identities = 735/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 1379 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1320 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || || ||||||| |||| ||||| Sbjct 1319 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 1261 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 1260 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1201 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 1200 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 1141 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || ||||||||||||| || |||| |||||||| ||||| || || |||||| | Sbjct 1140 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 1081 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 1080 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1021 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| ||||| || || || ||||| || || Sbjct 1020 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGC 961 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 |||||||| || ||| | |||||||| |||| || || |||||| ||||| ||||| Sbjct 960 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 901 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 900 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 841 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 840 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 781 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 780 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 721 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||| ||||| || || ||||| |||||||| || || || || Sbjct 720 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 661 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 660 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 602 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | ||||||| Sbjct 601 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 542 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 541 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 482 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 481 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 422 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 421 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 377 >seq74 Length=21493 Score = 199 bits (220), Expect = 1e-46 Identities = 250/343 (73%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | || |||| ||||||||||| || | ||||| |||||||| || || |||||| Sbjct 11009 AATGAAGGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGT 10950 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTC 43059 || ||||| || | ||||||| || || || ||| ||| ||||| || ||| Sbjct 10949 TATTTTGGCCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTC 10899 Query 43060 TTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATG 43119 || | || |||||||| || || || |||||||| ||| || | || | || |||||| Sbjct 10898 TTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 10839 Query 43120 GCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTC 43179 || || ||| | |||||||| || || ||||||||| | ||||||| ||| | ||| Sbjct 10838 GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTT 10779 Query 43180 ATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAG 43239 || |||||||||||||||| | || ||| | ||| |||| | || || ||||| || Sbjct 10778 ATTAATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAA 10719 Query 43240 CGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 || ||||| || |||||||| || || || || | || |||| Sbjct 10718 CGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 10676 >seq2 Length=19320864 Score = 161 bits (178), Expect = 3e-35 Identities = 189/253 (75%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 8835020 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 8835079 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || || |||| || |||| ||||| Sbjct 8835080 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCAT 8835138 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 8835139 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 8835198 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 8835199 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 8835258 Query 42519 GTATTCGATCTGG 42531 || |||||||| Sbjct 8835259 TTACCCGATCTGG 8835271 >seq5 Length=21221946 Score = 80.6 bits (88), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 42394 TTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTT 42453 ||||||||||| ||||| ||||| |||||| |||| ||||| ||| ||||| |||||| Sbjct 6509013 TTCATTGCTGCTCCTCCAGTAGATATTGAT---ATTCATGAACATGTTTCTGGATCTCTT 6509069 Query 42454 CTGTATGGCAACAACATCAT 42473 || || | ||||||||||| Sbjct 6509070 CTTTACGTAAACAACATCAT 6509089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531613701408