Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq696 493 4e-135
seq74 168 2e-37
seq2 114 4e-21
>seq696
Length=154923
Score = 493 bits (546), Expect = 4e-135
Identities = 699/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || ||||||
Sbjct 388 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 447
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| || | ||| | | ||| ||||||||
Sbjct 448 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 507
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| || | ||||| | || || | |
Sbjct 508 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 567
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
|| || || || |||||||||| || | |||||||| | |||||| || || |||
Sbjct 568 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 627
Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176
|| ||||| || || || |||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 628 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 687
Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236
||||| |||||||| || | || || | ||| || | | ||||| |||||
Sbjct 688 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 747
Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296
|| | ||||| ||||| || ||||||||| ||||| | || ||||| ||
Sbjct 748 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 807
Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356
||||| ||||| ||| || ||||||||||| || || || || || || ||||||||
Sbjct 808 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 867
Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416
| ||||||||| |||||||||||||| || |||||||| |||||| |||||| || ||
Sbjct 868 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 927
Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476
|| | ||||| | ||||| || || || || | | || |||| |||||||||
Sbjct 928 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACC 987
Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536
||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 988 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1047
Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596
||||| || | ||| ||||| | | ||| |||| ||| || || || |||||||||||
Sbjct 1048 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 1107
Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656
|| || | | ||||||||||||||||||||||||| | || || || ||| |
Sbjct 1108 TCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTA 1167
Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716
|| | | || || || || |||||||||||||| | | || || ||||| || |||
Sbjct 1168 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1227
Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776
|| || ||||| |||||||| || || || || ||||| || | |||||| | |||
Sbjct 1228 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTT 1287
Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836
|| | | |||| || ||||| | || || |||||||| | || |||||||| |||
Sbjct 1288 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1347
Query 26837 GTACTTGTAACCCACTCACAAAA 26859
|| || || | ||| | ||| ||
Sbjct 1348 GTGCTGGTTATCCAGTTACAGAA 1370
>seq74
Length=21493
Score = 168 bits (186), Expect = 2e-37
Identities = 229/318 (72%), Gaps = 11/318 (3%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || | ||||
Sbjct 10687 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 10746
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
| ||||| | | ||||||||| ||| || || | || || || ||| ||||||||
Sbjct 10747 GTACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 10805
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || |||||||||||||| || ||||| |||| ||||| | || || |
Sbjct 10806 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 10865
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || |||||||||| || | |||||||| | |||||| || || ||
Sbjct 10866 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 10925
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
|| | || || |||| ||||| || || || ||||| ||||| || || ||
Sbjct 10926 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 10976
Query 26176 CTCTTCATCTTGCCCAAA 26193
| ||| ||||| || ||
Sbjct 10977 TTATTCTTCTTGACCGAA 10994
>seq2
Length=19320864
Score = 114 bits (126), Expect = 4e-21
Identities = 171/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 26617 CCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATAT 26676
|||||||||||||||||| | || || || ||| | || | | || || || ||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 26677 TATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTAC 26736
|||||||||||||| | | || || ||||| || ||||| || ||||| ||||||||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 26737 AGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTAT 26796
|| || || || ||||| || | | |||| | ||| || | | |||| || ||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092
Query 26797 CATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856
||| | || || |||||||| | || |||||||| ||||| || || | ||| | |||
Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032
Query 26857 AAA 26859
||
Sbjct 8835031 GAA 8835029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147710779160320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |