Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq696 493 4e-135 seq74 168 2e-37 seq2 114 4e-21 >seq696 Length=154923 Score = 493 bits (546), Expect = 4e-135 Identities = 699/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 388 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 447 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| || | ||| | | ||| |||||||| Sbjct 448 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 507 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | | Sbjct 508 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 567 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| || | |||||||| | |||||| || || ||| Sbjct 568 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 627 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| ||||| ||||| || || || Sbjct 628 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 687 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| || | || || | ||| || | | ||||| ||||| Sbjct 688 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 747 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||||| | || ||||| || Sbjct 748 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 807 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 808 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 867 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| |||||| || || Sbjct 868 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 927 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||| | ||||| || || || || | | || |||| ||||||||| Sbjct 928 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACC 987 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 988 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1047 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| |||| ||| || || || ||||||||||| Sbjct 1048 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 1107 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||||||||||||||||| | || || || ||| | Sbjct 1108 TCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTA 1167 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | | || || ||||| || ||| Sbjct 1168 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1227 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776 || || ||||| |||||||| || || || || ||||| || | |||||| | ||| Sbjct 1228 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTT 1287 Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836 || | | |||| || ||||| | || || |||||||| | || |||||||| ||| Sbjct 1288 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1347 Query 26837 GTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 1348 GTGCTGGTTATCCAGTTACAGAA 1370 >seq74 Length=21493 Score = 168 bits (186), Expect = 2e-37 Identities = 229/318 (72%), Gaps = 11/318 (3%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || | |||| Sbjct 10687 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 10746 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 | ||||| | | ||||||||| ||| || || | || || || ||| |||||||| Sbjct 10747 GTACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 10805 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| |||| ||||| | || || | Sbjct 10806 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 10865 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || |||||||||| || | |||||||| | |||||| || || || Sbjct 10866 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 10925 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 || | || || |||| ||||| || || || ||||| ||||| || || || Sbjct 10926 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 10976 Query 26176 CTCTTCATCTTGCCCAAA 26193 | ||| ||||| || || Sbjct 10977 TTATTCTTCTTGACCGAA 10994 >seq2 Length=19320864 Score = 114 bits (126), Expect = 4e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 26617 CCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATAT 26676 |||||||||||||||||| | || || || ||| | || | | || || || || Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212 Query 26677 TATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTAC 26736 |||||||||||||| | | || || ||||| || ||||| || ||||| |||||||| Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152 Query 26737 AGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTAT 26796 || || || || ||||| || | | |||| | ||| || | | |||| || || Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092 Query 26797 CATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 ||| | || || |||||||| | || |||||||| ||||| || || | ||| | ||| Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032 Query 26857 AAA 26859 || Sbjct 8835031 GAA 8835029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710779160320