Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq696 565 3e-156 seq74 201 1e-46 seq2 111 2e-19 >seq696 Length=154923 Score = 565 bits (626), Expect = 3e-156 Identities = 713/977 (73%), Gaps = 12/977 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 1348 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 1289 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 1288 CAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 1229 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 1228 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTC 1169 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || |||||| | || || || || || |||||||| ||| | |||||| Sbjct 1168 CTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATG 1109 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 1108 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 1051 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || |||||| || ||||||||||||| Sbjct 1050 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 992 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | |||||||| || || || || | |||||| ||||| ||| | | ||||| Sbjct 991 TTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAA 932 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | ||||| || ||| ||||||| |||||||| || |||||||||||||| |||| || Sbjct 931 TTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 872 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 871 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 812 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || ||||| ||||||||| ||||| ||||| || ||| Sbjct 811 CTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 752 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 751 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAG 692 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| |||||||| || || || || || | |||||||| |||| Sbjct 691 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 632 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | |||||||| || | | | || |||||| | || || ||||| || || | | Sbjct 631 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 572 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||| Sbjct 571 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 512 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| || ||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 511 ACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 455 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| | Sbjct 454 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 395 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| ||||||| |||| Sbjct 394 ACCTAGCTGCTGTTGAG 378 >seq74 Length=21493 Score = 201 bits (222), Expect = 1e-46 Identities = 249/339 (73%), Gaps = 15/339 (4%) Strand=Plus/Minus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||||| ||||| ||||||||| ||||||| |||||||| ||||||||||| || || Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 || || | ||||||| || |||||||| || | | | || |||||| | Sbjct 10943 GGCCGATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 || || ||||| || || | || ||| |||||| | ||| | || ||||| ||| Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833 Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 ||||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGGCGTGTTATT 10776 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 ||| ||||| || ||| ||||||| || ||||||||||||| ||||| || ||| Sbjct 10775 AATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGT 10716 Query 155923 AACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 || ||||||||||||||||| ||||| ||||||| |||| Sbjct 10715 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10677 >seq2 Length=19320864 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 8835051 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 8835110 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || || |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 8835111 CAACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 8835170 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 8835171 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTC 8835230 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGG 155211 ||| ||| || |||||| | || || || || || ||| Sbjct 8835231 CTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG 8835271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584830111933760