Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq696 533 4e-147 seq74 176 1e-39 seq2 123 7e-24 >seq696 Length=154923 Score = 533 bits (590), Expect = 4e-147 Identities = 714/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 378 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 437 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 438 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 497 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| |||||||||||| ||||| | Sbjct 498 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 557 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 558 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 617 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || | || ||||| |||||||| |||||||| || Sbjct 618 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 677 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||| ||||| || |||| || || || | || || | || |||||| |||| || Sbjct 678 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 737 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| ||| | | || Sbjct 738 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 797 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||||||||| ||||||||||| || || Sbjct 798 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 857 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 858 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 917 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | |||||||| | |||||| | ||||| ||||| || |||| | ||||||| Sbjct 918 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGA 977 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| || ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 978 ATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1037 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || || ||||| Sbjct 1038 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1097 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||| ||||| ||||| | || || || Sbjct 1098 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1157 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | | || || || Sbjct 1158 TGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1217 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 1218 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1277 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1278 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1337 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||||||||| || Sbjct 1338 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1370 >seq74 Length=21493 Score = 176 bits (194), Expect = 1e-39 Identities = 261/369 (71%), Gaps = 11/369 (3%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 10677 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 10736 Query 40583 ACCTAGACTCTGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGT 40641 ||| | | | || | ||||| || ||||||||||||| ||| || || | | | Sbjct 10737 ACC-AAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTAT 10795 Query 40642 CTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCA 40701 | |||||||| ||||| || || |||||||| ||||| ||||||||||| ||||| | Sbjct 10796 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 10855 Query 40702 TGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGC 40761 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 10856 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 10915 Query 40762 TATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGA 40821 |||||||| | | || || | || ||||| ||||| || |||||||| | Sbjct 10916 AATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 10966 Query 40822 TGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCG 40881 |||| ||||| | |||| ||||| || | || || | || |||||| |||| Sbjct 10967 TGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTA 11026 Query 40882 TGGTCTCCC 40890 |||| |||| Sbjct 11027 TGGTTTCCC 11035 >seq2 Length=19320864 Score = 123 bits (136), Expect = 7e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 41273 CCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATAT 41332 |||||| ||||| ||||| | || || || ||| | |||| | || || || || Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212 Query 41333 AATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTAC 41392 ||||||||| ||||| | | || || ||||| || ||||| || ||||| |||||||| Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152 Query 41393 AGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAAT 41452 || || || || || || ||||| | ||| | || || || | ||| | || || Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGAT 8835092 Query 41453 CATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACA 41512 ||| | ||||||||||| || | ||| || ||||| || ||||| || | ||||||||| Sbjct 8835091 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 8835032 Query 41513 AAA 41515 || Sbjct 8835031 GAA 8835029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701212299664