Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq696 589 2e-163
seq74 206 3e-48
seq2 120 3e-22
>seq696
Length=154923
Score = 589 bits (652), Expect = 2e-163
Identities = 734/1002 (73%), Gaps = 18/1002 (2%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 375 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 434
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
||| ||||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 435 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 491
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 492 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 551
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 552 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 611
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| ||||| ||||||||||| || || || || || ||||||||
Sbjct 612 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 671
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| ||||||||||| ||||| ||||||| | || || || |
Sbjct 672 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 731
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765
|| || ||||| ||||| | | |||||| || | ||||| |||||||||||||| ||
Sbjct 732 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 791
Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|| || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||
Sbjct 792 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 851
Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885
||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||
Sbjct 852 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 911
Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945
||| ||| || ||||| | ||||||| |||||| ||||| || || | || ||
Sbjct 912 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 971
Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005
||| || ||||| || ||||||||||||||||| |||||| || |||||||||||
Sbjct 972 AGCTGAATATGCAACCGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1031
Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062
|||||| | | | ||| | || | | ||||| | || | |||| ||||
Sbjct 1032 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1088
Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122
||||| || || | ||| ||||| | | ||| ||||||||||| || || || || |
Sbjct 1089 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 1148
Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182
||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | ||
Sbjct 1149 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 1208
Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242
|| || | ||||||||| | |||||||| ||||| |||||||| || |||||||||||
Sbjct 1209 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1268
Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299
|| || || | |||| ||| | | ||| ||| |||||||| ||||| |||||
Sbjct 1269 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1325
Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341
|||| || | || || ||| ||| | |||||||||
Sbjct 1326 TCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 1367
>seq74
Length=21493
Score = 206 bits (228), Expect = 3e-48
Identities = 251/342 (73%), Gaps = 15/342 (4%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 10674 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 10733
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT-- 67466
||| |||| | | ||||| || || ||||||||| ||| || || |||
Sbjct 10734 CATACCAAAGTTAGTACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 10790
Query 67467 -GCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 10791 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 10850
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 10851 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 10910
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| |||||||||| || || || || |||||||||||
Sbjct 10911 ACGAGAATTGTTGAAA---------CGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 10961
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACC 67687
|||||||||||||| | ||||||||| ||||| |||||||
Sbjct 10962 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACC 11003
>seq2
Length=19320864
Score = 120 bits (132), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 68102 CCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAAT 68161
|||||| || || || || | ||| || || ||| |||||| || ||||| |||||
Sbjct 8835271 CCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAAT 8835212
Query 68162 GATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAAC 68221
|| ||||| ||||| | || || || | ||||||||| | |||||||| ||||| ||
Sbjct 8835211 AATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 8835152
Query 68222 TGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGG 68278
|||||| || ||||||||||| || | || | |||| ||| | | ||| |||
Sbjct 8835151 TGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGT---TGCGGTCAATAAGGTAGG 8835095
Query 68279 AATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTT 68338
|||||||| ||||| ||||| |||| || | || || ||| ||| | ||||||
Sbjct 8835094 GATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTT 8835035
Query 68339 ACA 68341
|||
Sbjct 8835034 ACA 8835032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566942267559360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |