Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq7 149 9e-31
seq6 107 3e-18
seq2 105 1e-17
seq4 96.9 5e-15
>seq7
Length=24649197
Score = 149 bits (164), Expect = 9e-31
Identities = 235/337 (70%), Gaps = 7/337 (2%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| || |||||| ||| | |||||| ||||| || || ||||||||| || ||
Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
| || ||||||| ||||| ||| || | ||| |||||||| || |||| ||| |||
Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 21840468
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334
|||||||| |||||||| || || |||| | ||| ||||| || || || | | ||
Sbjct 21840469 AATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCT---TTGA--GATC 21840523
Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
|| |||||||| ||||||||| ||| | ||| || || | || || |
Sbjct 21840524 CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTG 21840583
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
| ||| | || |||| | |||||| ||||| || |||||||||| | | | ||
Sbjct 21840584 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 21840643
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAA 18489
|||| |||||||| || | || || || || || ||
Sbjct 21840644 ACATCTCAGAATGAATATTCTCGATCGCGATTTGGAA 21840680
Score = 84.2 bits (92), Expect = 3e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| | ||||| | ||| ||||| ||||||| || ||
Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || |||||| ||| || |||||||| |||| || ||| | || ||
Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCAG 18994007
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | || || ||||| || || ||| |||| || ||||||| ||
Sbjct 18994006 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAAC 18993947
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| | || || ||||| ||
Sbjct 18993946 ATCCAGAAAGAATCAACTCTCCATTTGGT 18993918
>seq6
Length=25113588
Score = 107 bits (118), Expect = 3e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||||||| ||||| || || || || || |||
Sbjct 23403963 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 23404022
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||||||| || || ||||| ||||| || || ||||| || ||
Sbjct 23404023 GACACCATCGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCAG 23404082
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || |||||| ||||||||| | ||||| ||
Sbjct 23404083 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAAC 23404142
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | || ||||| || || ||
Sbjct 23404143 ATTCAGAAGGAGTCTACACTTCACTTGGTCTT 23404174
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| ||||| || || || || || |||
Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || || || ||||| || || ||||| || ||
Sbjct 22758735 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCAG 22758676
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | |||||| || || || |||||| ||||||||| | || || ||
Sbjct 22758675 CAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTACAAC 22758616
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | || ||||| || |||||
Sbjct 22758615 ATTCAGAAGGAGTCTACCCTTCACTTGGTGTT 22758584
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||| || || ||||| || ||||| || |||
Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| ||| || || || || |||||||| || ||||| || ||
Sbjct 905814 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 905755
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||||||||||||||| || ||| |||||| | | || || ||
Sbjct 905754 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 905695
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| |||| |||||
Sbjct 905694 ATCCAGAAGGAGTCGACACTTCA 905672
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| ||||| || || || || || |||
Sbjct 22900665 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22900724
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || || || ||||| || || ||||| || ||
Sbjct 22900725 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 22900784
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || ||||| ||||||||| | || || ||
Sbjct 22900785 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 22900844
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035
|| || ||| | || |||||||| ||||||
Sbjct 22900845 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 22900877
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||| | ||| | |||||| | ||||| || || || || | || || || |||
Sbjct 8749690 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTCT 8749631
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || || || || || || |||||||| ||||| || ||
Sbjct 8749630 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 8749571
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | || ||||||||||| |||||| | | || || | ||||| |||
Sbjct 8749570 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 8749511
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| | || || ||||| || | | |||||||| |||
Sbjct 8749510 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGGT 8749463
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || | || |||||||||||||| | ||||| || ||||
Sbjct 22900437 ATGCAGATTTTCGTCAAGACCCTAACGGGAAAAACTATTACTCTTGAAGTGGAGAGTTCT 22900496
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || |||||||| || || |||||||| || || || ||||| || ||
Sbjct 22900497 GACACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCGGATCAG 22900556
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| |||||| | || ||| |||||| | | || || ||
Sbjct 22900557 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACCCTTGCTGACTACAAC 22900616
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| || ||| |||| ||||||
Sbjct 22900617 ATCCAGAAGGAGTCGACCCTTCAT 22900640
>seq2
Length=19320864
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||| ||||| || || || ||| |||
Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| ||| || || ||||| ||||| || ||||| || ||
Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || || | || | | ||||| |||
Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || |||||||| ||| | | | ||||| |||
Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGGT 9126701
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||| ||||| || || || ||| |||
Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| ||| || || ||||| ||||| || ||||| || ||
Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || || | || | | ||||| |||
Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || |||||||| ||| | | | ||||| |||
Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGGT 9215482
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | |||||||| || ||||| || || || || ||
Sbjct 9126700 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 9126641
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || || || ||||| || ||||| || ||||| || |||
Sbjct 9126640 GACACTATTGATAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAA 9126581
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | ||||||||||||||| || ||| | |||||| | ||||| ||
Sbjct 9126580 CAGAGACTCATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGTACTTTAGCTGATTACAAC 9126521
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || || ||||| ||| | | | ||||| |||
Sbjct 9126520 ATCCAAAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 9126473
Score = 89.7 bits (98), Expect = 8e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| ||||| || || || ||||| || || || || ||
Sbjct 9126016 ATGCAAATATTTGTGAAAACTTTGACAGGCAAGACCATTACGTTGGAGGTTGAGAGCTCA 9125957
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || ||| || || || || || || || || ||||| |||
Sbjct 9125956 GACACAATCGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAA 9125897
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | || ||||| |||||||| ||| | |||||| | ||||| ||
Sbjct 9125896 CAGAGACTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGGACTTTAGCTGATTACAAC 9125837
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| ||||| || ||
Sbjct 9125836 ATCCAGAAGGAGTCGACTCTTCACTTGGT 9125808
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| ||||| || || || ||||| || || || || ||
Sbjct 9215253 ATGCAAATATTTGTGAAAACTTTGACAGGCAAGACCATTACGTTGGAGGTTGAGAGCTCA 9215194
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || ||| || || || || || || || || ||||| |||
Sbjct 9215193 GACACAATCGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAA 9215134
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || | || | ||||||||||||||| ||||||
Sbjct 9215133 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGAT 9215098
>seq4
Length=23328337
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||| || || ||||| || ||||| || |||
Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| ||| || || || || |||||||| || ||||| || ||
Sbjct 15771735 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 15771676
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||||||||||||||| || ||| |||||| | | || || ||
Sbjct 15771675 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 15771616
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| |||| |||||
Sbjct 15771615 ATCCAGAAGGAGTCGACACTTCA 15771593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731865632713600
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