Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7 149 9e-31 seq6 107 3e-18 seq2 105 1e-17 seq4 96.9 5e-15 >seq7 Length=24649197 Score = 149 bits (164), Expect = 9e-31 Identities = 235/337 (70%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||| ||| | |||||| ||||| || || ||||||||| || || Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||||| ||||| ||| || | ||| |||||||| || |||| ||| ||| Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 21840468 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 |||||||| |||||||| || || |||| | ||| ||||| || || || | | || Sbjct 21840469 AATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCT---TTGA--GATC 21840523 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 || |||||||| ||||||||| ||| | ||| || || | || || | Sbjct 21840524 CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTG 21840583 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | ||| | || |||| | |||||| ||||| || |||||||||| | | | || Sbjct 21840584 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 21840643 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAA 18489 |||| |||||||| || | || || || || || || Sbjct 21840644 ACATCTCAGAATGAATATTCTCGATCGCGATTTGGAA 21840680 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | ||||| | ||| ||||| ||||||| || || Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||| || |||||||| |||| || ||| | || || Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCAG 18994007 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || || ||||| || || ||| |||| || ||||||| || Sbjct 18994006 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAAC 18993947 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || ||||| || Sbjct 18993946 ATCCAGAAAGAATCAACTCTCCATTTGGT 18993918 >seq6 Length=25113588 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| ||||| || || || || || ||| Sbjct 23403963 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 23404022 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| || || ||||| ||||| || || ||||| || || Sbjct 23404023 GACACCATCGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCAG 23404082 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || |||||| ||||||||| | ||||| || Sbjct 23404083 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAAC 23404142 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 23404143 ATTCAGAAGGAGTCTACACTTCACTTGGTCTT 23404174 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| ||||| || || || || || ||| Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || ||||| || || ||||| || || Sbjct 22758735 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCAG 22758676 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| || || || |||||| ||||||||| | || || || Sbjct 22758675 CAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTACAAC 22758616 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || ||||| Sbjct 22758615 ATTCAGAAGGAGTCTACCCTTCACTTGGTGTT 22758584 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || ||||| || ||||| || ||| Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || || || |||||||| || ||||| || || Sbjct 905814 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 905755 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| || ||| |||||| | | || || || Sbjct 905754 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 905695 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 905694 ATCCAGAAGGAGTCGACACTTCA 905672 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| ||||| || || || || || ||| Sbjct 22900665 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22900724 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || ||||| || || ||||| || || Sbjct 22900725 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 22900784 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || ||||| ||||||||| | || || || Sbjct 22900785 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 22900844 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| | || |||||||| |||||| Sbjct 22900845 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 22900877 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||| | ||| | |||||| | ||||| || || || || | || || || ||| Sbjct 8749690 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTCT 8749631 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || |||||||| ||||| || || Sbjct 8749630 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 8749571 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||||||||| |||||| | | || || | ||||| ||| Sbjct 8749570 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 8749511 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || ||||| || | | |||||||| ||| Sbjct 8749510 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGGT 8749463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || |||||||||||||| | ||||| || |||| Sbjct 22900437 ATGCAGATTTTCGTCAAGACCCTAACGGGAAAAACTATTACTCTTGAAGTGGAGAGTTCT 22900496 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || |||||||| || || || ||||| || || Sbjct 22900497 GACACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCGGATCAG 22900556 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| |||||| | || ||| |||||| | | || || || Sbjct 22900557 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACCCTTGCTGACTACAAC 22900616 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 22900617 ATCCAGAAGGAGTCGACCCTTCAT 22900640 >seq2 Length=19320864 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| ||||| || || || ||| ||| Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || ||||| ||||| || ||||| || || Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | || | | ||||| ||| Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| ||| | | | ||||| ||| Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGGT 9126701 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| ||||| || || || ||| ||| Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || ||||| ||||| || ||||| || || Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | || | | ||||| ||| Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| ||| | | | ||||| ||| Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGGT 9215482 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || ||||| || || || || || Sbjct 9126700 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 9126641 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || ||||| || ||||| || ||||| || ||| Sbjct 9126640 GACACTATTGATAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAA 9126581 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||||||||| || ||| | |||||| | ||||| || Sbjct 9126580 CAGAGACTCATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGTACTTTAGCTGATTACAAC 9126521 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| ||| | | | ||||| ||| Sbjct 9126520 ATCCAAAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 9126473 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || || || ||||| || || || || || Sbjct 9126016 ATGCAAATATTTGTGAAAACTTTGACAGGCAAGACCATTACGTTGGAGGTTGAGAGCTCA 9125957 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || || || || || || || || ||||| ||| Sbjct 9125956 GACACAATCGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAA 9125897 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| |||||||| ||| | |||||| | ||||| || Sbjct 9125896 CAGAGACTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGGACTTTAGCTGATTACAAC 9125837 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| ||||| || || Sbjct 9125836 ATCCAGAAGGAGTCGACTCTTCACTTGGT 9125808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || || || ||||| || || || || || Sbjct 9215253 ATGCAAATATTTGTGAAAACTTTGACAGGCAAGACCATTACGTTGGAGGTTGAGAGCTCA 9215194 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || || || || || || || || ||||| ||| Sbjct 9215193 GACACAATCGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAA 9215134 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||||||||||||||| |||||| Sbjct 9215133 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGAT 9215098 >seq4 Length=23328337 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || ||||| || ||||| || ||| Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || || || |||||||| || ||||| || || Sbjct 15771735 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 15771676 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| || ||| |||||| | | || || || Sbjct 15771675 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 15771616 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 15771615 ATCCAGAAGGAGTCGACACTTCA 15771593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865632713600