Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 136 7e-27 seq1 131 3e-25 seq6 122 2e-22 seq7 113 8e-20 seq4 113 8e-20 seq5 87.8 3e-12 >seq2 Length=19320864 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || ||||| | |||| |||||| ||||| ||||| Sbjct 9126699 ATACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCA 9126758 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || ||||||||||| || | ||||| || || || Sbjct 9126759 GCGAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 9126818 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || ||| ||| |||||| ||||||||||| ||| Sbjct 9126819 GGGATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCA 9126878 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| ||||| || || || | || |||||||| Sbjct 9126879 ACCTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || ||||| | |||| |||||| ||||| ||||| Sbjct 9215480 ATACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCA 9215539 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || ||||||||||| || | ||||| || || || Sbjct 9215540 GCGAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 9215599 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || ||| ||| |||||| ||||||||||| ||| Sbjct 9215600 GGGATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCA 9215659 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| ||||| || || || | || |||||||| Sbjct 9215660 ACCTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | |||| |||||| || || ||||| Sbjct 9126471 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCA 9126530 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | || ||||| ||||| || | ||||||||| || || Sbjct 9126531 GCTAAAGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGA 9126590 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || |||||| ||||| ||||| || Sbjct 9126591 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCA 9126650 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||| || ||||| | || || | || |||||||| Sbjct 9126651 ACCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || ||||| | || | || || ||||| |||||| Sbjct 9126927 ATACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCT 9126986 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || || ||||||||||| || || |||||||| |||||||| Sbjct 9126987 GCCAAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGA 9127046 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || ||||| || || || || || Sbjct 9127047 GGAATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 9127106 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || ||||| | |||||| | ||| || ||||| Sbjct 9127107 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | |||| || || || || ||||| Sbjct 9214796 ATACCACCACGAAGGCGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCA 9214855 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | ||||| |||||||| || | |||||||||||| ||| Sbjct 9214856 GCCAAAGTCCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGT 9214915 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| ||| |||||| |||||||| || ||| Sbjct 9214916 GGGATCCCCTCCTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTATCGGAACTTTCA 9214975 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || | || || | || |||||||| Sbjct 9214976 ACCTCCAAAGTTATGGTTTTCCCGGTAAGGGTCTTCACAAAGATCTGCAT 9215025 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || ||||| | || | || || ||||| |||||| Sbjct 9215708 ATACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCT 9215767 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || || ||||||||||| || || |||||||| |||||||| Sbjct 9215768 GCCAAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGA 9215827 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || ||||| || || || || || Sbjct 9215828 GGAATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 9215887 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || ||||| | |||||| | ||| || ||||| Sbjct 9215888 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | |||| || || || || || || Sbjct 9215252 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCA 9215311 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||||||||| || || | |||||||||||| ||| Sbjct 9215312 GCCAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGT 9215371 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| ||||| ||||| || Sbjct 9215372 GGGATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTGTCTGAGCTCTCA 9215431 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||| || ||||| | || || | || |||||||| Sbjct 9215432 ACCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9215481 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | |||| || || || || ||||| Sbjct 9126015 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCA 9126074 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||| ||||| || || | |||||||||||| ||| Sbjct 9126075 GCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGT 9126134 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| || |||||| |||||||| || ||| Sbjct 9126135 GGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCGATAGTATCGGAACTTTCA 9126194 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || | || || | || |||||||| Sbjct 9126195 ACCTCCAAAGTTATGGTTTTCCCGGTAAGGGTCTTTACAAAGATCTGCAT 9126244 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || | ||| | ||| || || || ||||| | | Sbjct 9125790 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCT 9125849 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || | ||||||||||| || || | |||||||||||| ||||| Sbjct 9125850 AAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 9125909 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || || ||| || || ||| || || ||||| || || Sbjct 9125910 ATCCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACC 9125969 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||| || || || || ||||| | ||||| ||||| Sbjct 9125970 TCCAACGTAATGGTCTTGCCTGTCAAAGTTTTCACAAATATTTGCAT 9126016 >seq1 Length=33132539 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | ||| | ||| | ||||| || || |||||| Sbjct 29080843 ATACCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCT 29080784 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||||||||| || |||| ||||||||| || || Sbjct 29080783 GCAAGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGA 29080724 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || ||| ||| || || || || ||||| || Sbjct 29080723 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCG 29080664 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| |||||||||||||| || | || || |||||||||||||| Sbjct 29080663 ACTTCTAGGGTAATGGTTTTACCGGTGAGCGTCTTGATGAATATCTGCAT 29080614 Score = 125 bits (138), Expect = 1e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| || || | || ||||| | || | |||||| ||| || ||||| | Sbjct 10397125 ACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 10397066 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | | || ||||||||||| || || || ||||| | || || || ||||| Sbjct 10397065 GAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGG 10397006 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| || || ||| ||||| || || ||||| ||||| || Sbjct 10397005 GATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 10396946 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||||| || || || || || |||| ||||| | ||| ||||||||||| || Sbjct 10396945 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 10396892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | || | ||| | || | |||||| || || ||||| Sbjct 29081071 ATACCACCACGGAGTCTCAGCACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAATCA 29081012 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| || || ||||| || | |||||||||||| ||| Sbjct 29081011 GCAAGAGTGCGACCATCTTCGAGTTGCTTGCCTGCAAAGATGAGTCTCTGTTGGTCTGGT 29080952 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| |||||||| || || || ||| || || ||||| || Sbjct 29080951 GGGATCCCTTCTTTGTCTTGTATCTTGGCCTTCACGTTATCGATTGTGTCTGAGCTCTCA 29080892 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| || || | || || | ||| |||||||| Sbjct 29080891 ACTTCCAAAGTTATGGTTTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 29080842 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || ||||| | || || || || | ||| | |||||| || || | Sbjct 16745283 TCATAGTCCCGCCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 16745224 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||| | ||| | || || | ||| ||||||||||| || || |||||||| | Sbjct 16745223 AATCCGCTAATGTTCGACCATCTTCAAGTTGCTTACCAGCAAATATCAACCTCTGTTGAT 16745164 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||||| ||||| || ||| || Sbjct 16745163 CAGGTGGTATTCCCTCTTTGTCCTGTTTT 16745135 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| || || ||||| | ||||| || | || || | ||| || || Sbjct 29081727 AGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGCTTCCC 29081668 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||| |||| ||||| ||||| ||||| || |||||||| || || || || || Sbjct 29081667 GGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTTGCCTT 29081608 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| || ||||| || ||| ||||| || || ||||| || || || || || Sbjct 29081607 CACATTGTCAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGT 29081548 Query 172052 TTTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 29081547 CTTGACAAATATCTGCAT 29081530 >seq6 Length=25113588 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | |||| |||||| ||||| || || Sbjct 10622319 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCA 10622260 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| ||||| || || | |||||| ||||| ||| Sbjct 10622259 GCGAGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGT 10622200 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || || ||| ||| ||||| ||||| ||||| || Sbjct 10622199 GGGATTCCCTCTTTATCCTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 10622140 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||||||||| ||||| || | || |||||||| Sbjct 10622139 ACCTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCAT 10622090 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | ||||| |||||| || || || || Sbjct 905417 ATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCA 905476 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | |||| || | || ||||| ||||| || | ||||||||||| || Sbjct 905477 GCAAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGA 905536 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || ||| |||||| || || ||||| || Sbjct 905537 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCA 905596 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||||||||| | || || | || |||||||| Sbjct 905597 ACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 905646 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||| || || | |||||||||||| ||||| || ||||| || ||||| || Sbjct 8748633 TGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATC 8748692 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || |||||| || || ||||| || || || |||||||||||||| || Sbjct 8748693 TTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCGACCTCAAGAGTAATGGTTTTTCCG 8748752 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || | || |||||||| Sbjct 8748753 GTAAGTGTCTTCACAAAAATCTGCAT 8748778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || ||||| | || | |||||| || || || || Sbjct 8749005 ATACCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCA 8749064 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || ||||| ||||| || | ||||| ||||| ||| Sbjct 8749065 GCCAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGT 8749124 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || || ||| ||| ||||| || || ||||| || Sbjct 8749125 GGGATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 8749184 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || ||||||||||| | || || | || || ||||| Sbjct 8749185 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | || | |||| || || ||| || ||||| Sbjct 905189 ATACCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCA 905248 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | ||||||||||| || || | ||||||||||| ||| Sbjct 905249 GCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT 905308 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| || |||||| || || ||||| || Sbjct 905309 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCC 905368 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || |||| || || | || |||||||| Sbjct 905369 ACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 905418 >seq7 Length=24649197 Score = 113 bits (124), Expect = 8e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || ||||| || || | |||||||||||| || || ||||||||||| Sbjct 18993744 TCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCTTTG 18993803 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| || || || || ||||| || ||||||||||||||| Sbjct 18993804 TCTTGAATCTTAGCTTTCACGTTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTAATG 18993863 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || | ||||| | ||||||||||| Sbjct 18993864 GTTTTACCGGTAAGAGTTTTCACAAATATCTGCAT 18993898 Score = 109 bits (120), Expect = 1e-18 Identities = 367/563 (65%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 38803 TTGCATTATCACTATTCATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAA 38862 || ||| | ||||| ||| ||| ||| || || ||| |||| | || || |||| Sbjct 21840032 TTCCATGAACACTAGACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAA 21840091 Query 38863 AGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTAT 38922 |||| ||||| |||| | || || || | ||| ||||||| ||||| | | || Sbjct 21840092 AGTTAGTTTTACCTTGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCAT 21840151 Query 38923 AATATTTTTCTCCTATCAATA-CATATAATAATCTATCGGCCACAAATTCAACATATTGT 38981 | | || | | ||| || ||||| ||||| || ||||| |||| || || Sbjct 21840152 AC-ACCTTACCACACCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGA 21840210 Query 38982 AACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCt 39041 ||| || |||| ||||||||| | || | | || | ||||| || ||| ||| Sbjct 21840211 CTCATCAACTCACGATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCT 21840270 Query 39042 ttttctatttctacagcttgtttaattatcataattatattattttttgataat--ttat 39099 | || || || || || | || |||| ||| | || || || | ||| Sbjct 21840271 CTCTCAATCTCAACCGCATCACAAACTATCG--ATTTCAAACGTTCTTCATCAAGCTTAG 21840328 Query 39100 atttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAG 39159 | ||| | || | ||| | ||||| || ||||| || | ||||||||| || | Sbjct 21840329 TTCTAAGAAGACT---ATAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCG 21840385 Query 39160 ATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATA 39219 | || ||||| ||| || || | ||| |||||||| |||| || || | ||| |||| Sbjct 21840386 AAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATA 21840445 Query 39220 TTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT-T 39278 | || ||| |||| ||| ||||||||||| || || || ||||| |||| ||||| | Sbjct 21840446 TCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCT 21840505 Query 39279 GCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttG 39338 | || | || | ||| | ||||| || || ||||| ||||||||||| | Sbjct 21840506 CAGCGAAGCTTTGA--GATC--CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTC 21840561 Query 39339 ATAGAAGGTATATTTTCTATAGC 39361 | | |||| || |||| || || Sbjct 21840562 ACACAAGGAATGGTTTCGATTGC 21840584 >seq4 Length=23328337 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | ||||| |||||| || || || || Sbjct 15771338 ATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCA 15771397 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | |||| || | || ||||| ||||| || | ||||||||||| || Sbjct 15771398 GCAAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGA 15771457 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || ||| |||||| || || ||||| || Sbjct 15771458 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCA 15771517 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||||||||| | || || | || |||||||| Sbjct 15771518 ACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 15771567 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | |||||||| || | || || | ||| | ||||| |||||| || || | Sbjct 16908340 TCATAGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGT 16908281 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||| | || | || |||||||| |||||||||||||| | || ||||| | Sbjct 16908280 AATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGAT 16908221 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||||| || || ||||| || ||| Sbjct 16908220 CAGGTGGAATACCCTCTTTGTCCTGT 16908195 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | || | |||| || || ||| || ||||| Sbjct 15771110 ATACCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCA 15771169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | ||||||||||| || || | ||||||||||| ||| Sbjct 15771170 GCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT 15771229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| || |||||| || || ||||| || Sbjct 15771230 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCC 15771289 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || |||| || || | || |||||||| Sbjct 15771290 ACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 15771339 >seq5 Length=21221946 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 ||||| ||||| | |||||| | | | |||||| |||| || || |||||||| ||| Sbjct 3397598 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCG 3397657 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT--TTCCCAAG 39603 ||||| || | |||| ||| || || || |||| || || | ||| || || || Sbjct 3397658 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 3397717 Query 39604 ATTCAAGATCGTT---TGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660 || | | || ||||| |||||||||||| ||||| || |||||| ||| || Sbjct 3397718 --TCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 3397775 Query 39661 TTTTATACATTT 39672 |||| ||||||| Sbjct 3397776 TTTTGTACATTT 3397787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128125316800