Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 7e-27
seq1 131 3e-25
seq6 122 2e-22
seq7 113 8e-20
seq4 113 8e-20
seq5 87.8 3e-12
>seq2
Length=19320864
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||||||||| || | || ||||| | |||| |||||| ||||| |||||
Sbjct 9126699 ATACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCA 9126758
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || |||| || | || ||||||||||| || | ||||| || || ||
Sbjct 9126759 GCGAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 9126818
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| ||||| || || ||| ||| |||||| ||||||||||| |||
Sbjct 9126819 GGGATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCA 9126878
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | |||||||||||| ||||| || || || | || ||||||||
Sbjct 9126879 ACCTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||||||||| || | || ||||| | |||| |||||| ||||| |||||
Sbjct 9215480 ATACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCA 9215539
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || |||| || | || ||||||||||| || | ||||| || || ||
Sbjct 9215540 GCGAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 9215599
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| ||||| || || ||| ||| |||||| ||||||||||| |||
Sbjct 9215600 GGGATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCA 9215659
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | |||||||||||| ||||| || || || | || ||||||||
Sbjct 9215660 ACCTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || ||||| | |||| |||||| || || |||||
Sbjct 9126471 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCA 9126530
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||||| || | || || | || ||||| ||||| || | ||||||||| || ||
Sbjct 9126531 GCTAAAGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGA 9126590
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| || || || |||||| ||||| ||||| ||
Sbjct 9126591 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCA 9126650
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||||||||| || ||||| | || || | || ||||||||
Sbjct 9126651 ACCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | | | || ||||| | || | || || ||||| ||||||
Sbjct 9126927 ATACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCT 9126986
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || | || || || ||||||||||| || || |||||||| ||||||||
Sbjct 9126987 GCCAAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGA 9127046
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| ||||| || || || || ||||| || || || || ||
Sbjct 9127047 GGAATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 9127106
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||||||||| || ||||| | |||||| | ||| || |||||
Sbjct 9127107 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || || || | || | |||| || || || || |||||
Sbjct 9214796 ATACCACCACGAAGGCGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCA 9214855
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| ||| | || || | ||||| |||||||| || | |||||||||||| |||
Sbjct 9214856 GCCAAAGTCCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGT 9214915
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || || ||| ||| |||||| |||||||| || |||
Sbjct 9214916 GGGATCCCCTCCTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTATCGGAACTTTCA 9214975
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| |||||||| || || | || || | || ||||||||
Sbjct 9214976 ACCTCCAAAGTTATGGTTTTCCCGGTAAGGGTCTTCACAAAGATCTGCAT 9215025
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | | | || ||||| | || | || || ||||| ||||||
Sbjct 9215708 ATACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCT 9215767
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || | || || || ||||||||||| || || |||||||| ||||||||
Sbjct 9215768 GCCAAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGA 9215827
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| ||||| || || || || ||||| || || || || ||
Sbjct 9215828 GGAATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 9215887
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||||||||| || ||||| | |||||| | ||| || |||||
Sbjct 9215888 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || || || | || | |||| || || || || || ||
Sbjct 9215252 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCA 9215311
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| || | || || | ||||||||||| || || | |||||||||||| |||
Sbjct 9215312 GCCAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGT 9215371
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || || ||| ||| |||||| ||||| ||||| ||
Sbjct 9215372 GGGATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTATCGATAGTGTCTGAGCTCTCA 9215431
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||||||||| || ||||| | || || | || ||||||||
Sbjct 9215432 ACCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9215481
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || || || | || | |||| || || || || |||||
Sbjct 9126015 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCA 9126074
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| || | || || | ||||| ||||| || || | |||||||||||| |||
Sbjct 9126075 GCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGT 9126134
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || || ||| || |||||| |||||||| || |||
Sbjct 9126135 GGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCGATAGTATCGGAACTTTCA 9126194
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| |||||||| || || | || || | || ||||||||
Sbjct 9126195 ACCTCCAAAGTTATGGTTTTCCCGGTAAGGGTCTTTACAAAGATCTGCAT 9126244
Score = 89.7 bits (98), Expect = 9e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | || || || | ||| | ||| || || || ||||| | |
Sbjct 9125790 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCT 9125849
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|||| || | || || | ||||||||||| || || | |||||||||||| |||||
Sbjct 9125850 AAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 9125909
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || || || || || || ||| || || ||| || || ||||| || ||
Sbjct 9125910 ATCCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACC 9125969
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | |||||||| || || || || ||||| | ||||| |||||
Sbjct 9125970 TCCAACGTAATGGTCTTGCCTGTCAAAGTTTTCACAAATATTTGCAT 9126016
>seq1
Length=33132539
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || | ||| | ||| | ||||| || || ||||||
Sbjct 29080843 ATACCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCT 29080784
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | ||| | || || | ||||||||||| || |||| ||||||||| || ||
Sbjct 29080783 GCAAGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGA 29080724
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || ||||| || ||| ||| || || || || ||||| ||
Sbjct 29080723 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCG 29080664
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| |||||||||||||| || | || || ||||||||||||||
Sbjct 29080663 ACTTCTAGGGTAATGGTTTTACCGGTGAGCGTCTTGATGAATATCTGCAT 29080614
Score = 125 bits (138), Expect = 1e-23
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
||| ||||| || || | || ||||| | || | |||||| ||| || ||||| |
Sbjct 10397125 ACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 10397066
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
| | || | | || ||||||||||| || || || ||||| | || || || |||||
Sbjct 10397065 GAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGG 10397006
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
||||||||||| ||||| || || ||| ||||| || || ||||| ||||| ||
Sbjct 10397005 GATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 10396946
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075
||||| || || || || || |||| ||||| | ||| ||||||||||| ||
Sbjct 10396945 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 10396892
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | |||| | || | ||| | || | |||||| || || |||||
Sbjct 29081071 ATACCACCACGGAGTCTCAGCACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAATCA 29081012
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || || | || || | ||| || || ||||| || | |||||||||||| |||
Sbjct 29081011 GCAAGAGTGCGACCATCTTCGAGTTGCTTGCCTGCAAAGATGAGTCTCTGTTGGTCTGGT 29080952
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| |||||||| || || || ||| || || ||||| ||
Sbjct 29080951 GGGATCCCTTCTTTGTCTTGTATCTTGGCCTTCACGTTATCGATTGTGTCTGAGCTCTCA 29080892
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | ||| |||||||| || || | || || | ||| ||||||||
Sbjct 29080891 ACTTCCAAAGTTATGGTTTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 29080842
Score = 93.3 bits (102), Expect = 8e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
||||| | || || ||||| | || || || || | ||| | |||||| || || |
Sbjct 16745283 TCATAGTCCCGCCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 16745224
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||| | ||| | ||| | || || | ||| ||||||||||| || || |||||||| |
Sbjct 16745223 AATCCGCTAATGTTCGACCATCTTCAAGTTGCTTACCAGCAAATATCAACCTCTGTTGAT 16745164
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||||||||||| ||||| || ||| ||
Sbjct 16745163 CAGGTGGTATTCCCTCTTTGTCCTGTTTT 16745135
Score = 91.5 bits (100), Expect = 3e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931
||| | |||||| || || ||||| | ||||| || | || || | ||| || ||
Sbjct 29081727 AGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGCTTCCC 29081668
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
||||| |||| ||||| ||||| ||||| || |||||||| || || || || ||
Sbjct 29081667 GGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTTGCCTT 29081608
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
||||| || ||||| || ||| ||||| || || ||||| || || || || ||
Sbjct 29081607 CACATTGTCAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGT 29081548
Query 172052 TTTAATGAATATCTGCAT 172069
|| | |||||||||||
Sbjct 29081547 CTTGACAAATATCTGCAT 29081530
>seq6
Length=25113588
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || ||||| | |||| |||||| ||||| || ||
Sbjct 10622319 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCA 10622260
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || | || || | ||||| ||||| || || | |||||| ||||| |||
Sbjct 10622259 GCGAGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGT 10622200
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| |||||||| || || ||| ||| ||||| ||||| ||||| ||
Sbjct 10622199 GGGATTCCCTCTTTATCCTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 10622140
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || ||||||||||| ||||| || | || ||||||||
Sbjct 10622139 ACCTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCAT 10622090
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || ||||| | ||||| |||||| || || || ||
Sbjct 905417 ATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCA 905476
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || || | |||| || | || ||||| ||||| || | ||||||||||| ||
Sbjct 905477 GCAAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGA 905536
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || || || || || ||| |||||| || || ||||| ||
Sbjct 905537 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCA 905596
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||||||||| | || || | || ||||||||
Sbjct 905597 ACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 905646
Score = 96.9 bits (106), Expect = 6e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||| ||||| || || | |||||||||||| ||||| || ||||| || ||||| ||
Sbjct 8748633 TGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATC 8748692
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| || |||||| || || ||||| || || || |||||||||||||| ||
Sbjct 8748693 TTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCGACCTCAAGAGTAATGGTTTTTCCG 8748752
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||| || | || ||||||||
Sbjct 8748753 GTAAGTGTCTTCACAAAAATCTGCAT 8748778
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||||||||| || | || ||||| | || | |||||| || || || ||
Sbjct 8749005 ATACCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCA 8749064
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || | || || | || ||||| ||||| || | ||||| ||||| |||
Sbjct 8749065 GCCAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGT 8749124
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| |||||||| || || ||| ||| ||||| || || ||||| ||
Sbjct 8749125 GGGATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 8749184
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| ||||| || || ||||||||||| | || || | || || |||||
Sbjct 8749185 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || || | || | |||| || || ||| || |||||
Sbjct 905189 ATACCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCA 905248
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||||| || | || || | ||||||||||| || || | ||||||||||| |||
Sbjct 905249 GCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT 905308
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || || ||| || |||||| || || ||||| ||
Sbjct 905309 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCC 905368
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| ||||| || || |||| || || | || ||||||||
Sbjct 905369 ACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 905418
>seq7
Length=24649197
Score = 113 bits (124), Expect = 8e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || | ||| || ||||| || || | |||||||||||| || || |||||||||||
Sbjct 18993744 TCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCTTTG 18993803
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| || ||| ||| || || || || ||||| || |||||||||||||||
Sbjct 18993804 TCTTGAATCTTAGCTTTCACGTTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTAATG 18993863
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| || | ||||| | |||||||||||
Sbjct 18993864 GTTTTACCGGTAAGAGTTTTCACAAATATCTGCAT 18993898
Score = 109 bits (120), Expect = 1e-18
Identities = 367/563 (65%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 38803 TTGCATTATCACTATTCATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAA 38862
|| ||| | ||||| ||| ||| ||| || || ||| |||| | || || ||||
Sbjct 21840032 TTCCATGAACACTAGACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAA 21840091
Query 38863 AGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTAT 38922
|||| ||||| |||| | || || || | ||| ||||||| ||||| | | ||
Sbjct 21840092 AGTTAGTTTTACCTTGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCAT 21840151
Query 38923 AATATTTTTCTCCTATCAATA-CATATAATAATCTATCGGCCACAAATTCAACATATTGT 38981
| | || | | ||| || ||||| ||||| || ||||| |||| || ||
Sbjct 21840152 AC-ACCTTACCACACCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGA 21840210
Query 38982 AACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCt 39041
||| || |||| ||||||||| | || | | || | ||||| || ||| |||
Sbjct 21840211 CTCATCAACTCACGATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCT 21840270
Query 39042 ttttctatttctacagcttgtttaattatcataattatattattttttgataat--ttat 39099
| || || || || || | || |||| ||| | || || || | |||
Sbjct 21840271 CTCTCAATCTCAACCGCATCACAAACTATCG--ATTTCAAACGTTCTTCATCAAGCTTAG 21840328
Query 39100 atttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAG 39159
| ||| | || | ||| | ||||| || ||||| || | ||||||||| || |
Sbjct 21840329 TTCTAAGAAGACT---ATAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCG 21840385
Query 39160 ATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATA 39219
| || ||||| ||| || || | ||| |||||||| |||| || || | ||| ||||
Sbjct 21840386 AAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATA 21840445
Query 39220 TTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT-T 39278
| || ||| |||| ||| ||||||||||| || || || ||||| |||| ||||| |
Sbjct 21840446 TCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCT 21840505
Query 39279 GCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttG 39338
| || | || | ||| | ||||| || || ||||| ||||||||||| |
Sbjct 21840506 CAGCGAAGCTTTGA--GATC--CGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTC 21840561
Query 39339 ATAGAAGGTATATTTTCTATAGC 39361
| | |||| || |||| || ||
Sbjct 21840562 ACACAAGGAATGGTTTCGATTGC 21840584
>seq4
Length=23328337
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || ||||| | ||||| |||||| || || || ||
Sbjct 15771338 ATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCA 15771397
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || || | |||| || | || ||||| ||||| || | ||||||||||| ||
Sbjct 15771398 GCAAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGA 15771457
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || || || || || ||| |||||| || || ||||| ||
Sbjct 15771458 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCA 15771517
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||||||||| | || || | || ||||||||
Sbjct 15771518 ACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 15771567
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
||||| | |||||||| || | || || | ||| | ||||| |||||| || || |
Sbjct 16908340 TCATAGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGT 16908281
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||| | ||| | || | || |||||||| |||||||||||||| | || ||||| |
Sbjct 16908280 AATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGAT 16908221
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980
||||||| || || ||||| || |||
Sbjct 16908220 CAGGTGGAATACCCTCTTTGTCCTGT 16908195
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || || | || | |||| || || ||| || |||||
Sbjct 15771110 ATACCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCA 15771169
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||||| || | || || | ||||||||||| || || | ||||||||||| |||
Sbjct 15771170 GCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT 15771229
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || || ||| || |||||| || || ||||| ||
Sbjct 15771230 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCC 15771289
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| ||||| || || |||| || || | || ||||||||
Sbjct 15771290 ACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 15771339
>seq5
Length=21221946
Score = 87.8 bits (96), Expect = 3e-12
Identities = 136/192 (71%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545
||||| ||||| | |||||| | | | |||||| |||| || || |||||||| |||
Sbjct 3397598 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCG 3397657
Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT--TTCCCAAG 39603
||||| || | |||| ||| || || || |||| || || | ||| || || ||
Sbjct 3397658 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 3397717
Query 39604 ATTCAAGATCGTT---TGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660
|| | | || ||||| |||||||||||| ||||| || |||||| ||| ||
Sbjct 3397718 --TCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 3397775
Query 39661 TTTTATACATTT 39672
|||| |||||||
Sbjct 3397776 TTTTGTACATTT 3397787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905128125316800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |