Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 2e-17
seq4 100 8e-16
seq6 98.7 3e-15
seq1 95.1 4e-14
seq7 87.8 5e-12
>seq8
Length=22951293
Score = 105 bits (116), Expect = 2e-17
Identities = 360/547 (66%), Gaps = 28/547 (5%)
Strand=Plus/Plus
Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876
|||| |||||||||| | |||| || ||| ||||| ||||||| ||| | |
Sbjct 6867468 CCAGCTACATCAGGCCTATCCACTGTGACTTGCCTGTCAAATCTACCAGGACGCAACAGT 6867527
Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTG 288935
|| | || | | ||| | ||| || || || ||||| |||| | | ||| ||
Sbjct 6867528 GCGGAATCAAGAACATCCGGTCTATTGGTCGCAGCCAACACAATGACAC---CGGAATTA 6867584
Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993
| ||| |||||||| || |||| ||||||| || ||||| || ||||||||
Sbjct 6867585 CCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTC 6867644
Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051
||| | || || | |||||| ||| |||| ||||||||||| || ||||
Sbjct 6867645 CCACCACC-----CATCCCA---GCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAA 6867696
Query 289052 TGAAAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGAT 289110
| || | | ||| |||| ||| | | |||| | |||| || || || || | ||
Sbjct 6867697 TAAACACAATACAAGGAG-CTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAA 6867755
Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTAC 289169
|| || | ||||||| | | || ||||| || ||||| | | || || ||| | ||
Sbjct 6867756 GCACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCAC 6867814
Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229
||||| || || || || || |||| ||||||||| || || || ||||| || |
Sbjct 6867815 TCCAGCTTCTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGTGGACCAAC 6867874
Query 289230 TAATAGAACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCT 289285
|| | ||| ||||| || | || || || ||||| |||| || ||||| |||
Sbjct 6867875 CAACA-AACAACCTTTAGGAATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTCT 6867930
Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345
| || || || |||| ||| | | ||| || || | |||| ||| || |||||
Sbjct 6867931 TCAAGAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCCC 6867990
Query 289346 CAAAAGT 289352
|||| ||
Sbjct 6867991 CAAACGT 6867997
>seq4
Length=23328337
Score = 100 bits (110), Expect = 8e-16
Identities = 313/473 (66%), Gaps = 24/473 (5%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946
|| || ||||| || ||||| || | ||| | || | | | ||| ||| ||| ||||
Sbjct 14548828 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 14548771
Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006
|||| |||| | ||||| || || ||||| ||||||||||| |||||
Sbjct 14548770 CCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATT---ACCTC------ 14548720
Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062
|| || | || | |||| ||| ||||||||||||| ||||| || | ||| | |
Sbjct 14548719 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATG 14548661
Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120
|| |||| || | | | || ||| ||| | || | || | || || |||| ||
Sbjct 14548660 CAAGGAGCGTTCTCTTTGGCTTTCTTGAAAAGA--TCACGGACTCTTGAGGCACCAACAC 14548603
Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179
||||| |||| || ||||| |||||| | || | | || | ||| | |||| |||||
Sbjct 14548602 CAACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGTACACCAGCTTCA 14548544
Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239
|| || | || | |||| ||| || || || || ||||| || || | |||||
Sbjct 14548543 CCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACA 14548484
Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299
|| ||||| | || || ||| | | | || |||| || |||| | ||| || ||
Sbjct 14548483 CCTTTTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCACC 14548424
Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| |||| | || | ||||| |||||| ||| || |||||| |||| ||
Sbjct 14548423 ACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 14548371
>seq6
Length=25113588
Score = 98.7 bits (108), Expect = 3e-15
Identities = 272/410 (66%), Gaps = 14/410 (3%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| || ||||| |||||||| || || || || || || | ||| || ||| |
Sbjct 6219772 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTC 6219831
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057
||| | | ||| || | || || | |||||||||||||| || |||||||| |
Sbjct 6219832 CTCCTATA----CCGGTTCCC--CTCATTCTCCCAACAGCATCAATCTCATCAATGAACA 6219885
Query 289058 TCACACACGGAGAATTTTGTCT---CGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
| ||| || ||| || | || | | ||| || || ||||| || | |||||||
Sbjct 6219886 CTATACAAGGTGAA-TTAGCCTTTGCCCTGTTG--AACAAGTCTCTAACCCTAGATGCTC 6219942
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174
| | ||||||| |||| |||| || || || |||| | | || | ||| |
Sbjct 6219943 CTACACCAACAAACATCTCTATGAACTCCGAGCCGGACAAAGAGAAAAACGGAACACCGG 6220002
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
|||| || |||| ||| | |||| || || || || ||||| || ||||| || |
Sbjct 6220003 CTTCTCCGGCTATAGCCTTGGCCAAGAGAGTTTTTCCAGTTCCCGGCGGTCCAGTCAACA 6220062
Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAAT 289293
|| || ||||| | ||| ||||| || || | ||||||| ||| | || || |||
Sbjct 6220063 AGACGCCTTTTGGGATTTTAGCCCCCAAAG-CTGAGAATTTCTCTGGGGTTTTCAAGAAT 6220121
Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
|| || || || || | || | || || || || ||||||||||||
Sbjct 6220122 TCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 6220171
>seq1
Length=33132539
Score = 95.1 bits (104), Expect = 4e-14
Identities = 304/468 (65%), Gaps = 14/468 (3%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948
|| || |||||||| ||||| |||| ||| | || | | | || ||| ||||||
Sbjct 2327030 ATGTCTGCTCTGTTGGTTGCAGCCACTACGATAACACCAGTGTTACCCTCAAAACCATCC 2327089
Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008
|| || | | |||||||| || ||||| ||||||||||| ||||| ||
Sbjct 2327090 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 2327140
Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| | || | |||| ||| ||||||||||||| ||||| || | ||||| | ||
Sbjct 2327141 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 2327199
Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124
|||| ||||| | | || || || | || | || | || || |||| ||| ||
Sbjct 2327200 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 2327259
Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184
| |||| || ||||| |||||| | || | || ||| | ||| ||||| || ||
Sbjct 2327260 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGC 2327319
Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244
| || | ||||| || || || || || ||||| || || | | ||||| || ||
Sbjct 2327320 AATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 2327379
Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304
|| | || ||| | | | | ||||||| |||| | ||| || || | |||
Sbjct 2327380 GGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2327439
Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| | || | || || || || ||| || |||||| |||||||
Sbjct 2327440 CATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCATCAAAAGT 2327487
Score = 91.5 bits (100), Expect = 4e-13
Identities = 279/418 (67%), Gaps = 20/418 (5%)
Strand=Plus/Plus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
|||||||||||| || || | ||||||| || ||||| || ||||||||| ||
Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 26184189
Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056
|| || || | |||||| | | | || ||||| ||||| || ||||||||
Sbjct 26184190 TCC-----CATCCCA---GCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAT 26184241
Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
| | ||| || | ||| | || || | | || || || || || | ||||| ||
Sbjct 26184242 ACAATACAAGGTGC-TTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACC 26184300
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174
|| ||| ||| | | || ||||| || || || | | || | ||| | ||| ||
Sbjct 26184301 AACACCCACAAAAAGCTCCACAAACTCCGAGGCCGCG-CAAGAGAAGAACGGTACTCCTG 26184359
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
| || || || || ||||| ||||| ||||||||||| || ||||| ||||| | ||
Sbjct 26184360 CCTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 26184418
Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291
||| |||||| || | || || |||| || || | || || ||||| |||| || |
Sbjct 26184419 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 26184476
Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349
| || |||| ||||| | || | || || | |||| || || ||||| || ||
Sbjct 26184477 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCACCAGCAACATCTGCGAA 26184534
>seq7
Length=24649197
Score = 87.8 bits (96), Expect = 5e-12
Identities = 124/173 (72%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 233259 TTAAAAATGT-TGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317
|| |||| || || |||||| ||||||||||| ||||| ||||||||||| |||| |||
Sbjct 9116652 TTCAAAAAGTGTGCAGCACCATGAGCAATCATGCAATCGCGTTCCATTTCTCCAAAACGG 9116593
Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377
|||||||||||| || | || | ||| ||| | ||||| | |||||
Sbjct 9116592 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 9116533
Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430
| |||| | | ||| || || | |||||||||||||| |||| |||||
Sbjct 9116532 CGTCCACGGGAGTGAATCTTGTCATCAACCATATGCTTCAATCTCTGGTAATA 9116480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471804475066552
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