Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 105 2e-17 seq4 100 8e-16 seq6 98.7 3e-15 seq1 95.1 4e-14 seq7 87.8 5e-12 >seq8 Length=22951293 Score = 105 bits (116), Expect = 2e-17 Identities = 360/547 (66%), Gaps = 28/547 (5%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| |||||||||| | |||| || ||| ||||| ||||||| ||| | | Sbjct 6867468 CCAGCTACATCAGGCCTATCCACTGTGACTTGCCTGTCAAATCTACCAGGACGCAACAGT 6867527 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTG 288935 || | || | | ||| | ||| || || || ||||| |||| | | ||| || Sbjct 6867528 GCGGAATCAAGAACATCCGGTCTATTGGTCGCAGCCAACACAATGACAC---CGGAATTA 6867584 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | ||| |||||||| || |||| ||||||| || ||||| || |||||||| Sbjct 6867585 CCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTC 6867644 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051 ||| | || || | |||||| ||| |||| ||||||||||| || |||| Sbjct 6867645 CCACCACC-----CATCCCA---GCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAA 6867696 Query 289052 TGAAAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 | || | | ||| |||| ||| | | |||| | |||| || || || || | || Sbjct 6867697 TAAACACAATACAAGGAG-CTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAA 6867755 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTAC 289169 || || | ||||||| | | || ||||| || ||||| | | || || ||| | || Sbjct 6867756 GCACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCAC 6867814 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 ||||| || || || || || |||| ||||||||| || || || ||||| || | Sbjct 6867815 TCCAGCTTCTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGTGGACCAAC 6867874 Query 289230 TAATAGAACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCT 289285 || | ||| ||||| || | || || || ||||| |||| || ||||| ||| Sbjct 6867875 CAACA-AACAACCTTTAGGAATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTCT 6867930 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 | || || || |||| ||| | | ||| || || | |||| ||| || ||||| Sbjct 6867931 TCAAGAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCCC 6867990 Query 289346 CAAAAGT 289352 |||| || Sbjct 6867991 CAAACGT 6867997 >seq4 Length=23328337 Score = 100 bits (110), Expect = 8e-16 Identities = 313/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 || || ||||| || ||||| || | ||| | || | | | ||| ||| ||| |||| Sbjct 14548828 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 14548771 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||| | ||||| || || ||||| ||||||||||| ||||| Sbjct 14548770 CCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATT---ACCTC------ 14548720 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||| ||||| || | ||| | | Sbjct 14548719 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATG 14548661 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || |||| || | | | || ||| ||| | || | || | || || |||| || Sbjct 14548660 CAAGGAGCGTTCTCTTTGGCTTTCTTGAAAAGA--TCACGGACTCTTGAGGCACCAACAC 14548603 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 ||||| |||| || ||||| |||||| | || | | || | ||| | |||| ||||| Sbjct 14548602 CAACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGTACACCAGCTTCA 14548544 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | || | |||| ||| || || || || ||||| || || | ||||| Sbjct 14548543 CCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACA 14548484 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || ||||| | || || ||| | | | || |||| || |||| | ||| || || Sbjct 14548483 CCTTTTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCACC 14548424 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 14548423 ACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 14548371 >seq6 Length=25113588 Score = 98.7 bits (108), Expect = 3e-15 Identities = 272/410 (66%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| | Sbjct 6219772 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTC 6219831 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | | ||| || | || || | |||||||||||||| || |||||||| | Sbjct 6219832 CTCCTATA----CCGGTTCCC--CTCATTCTCCCAACAGCATCAATCTCATCAATGAACA 6219885 Query 289058 TCACACACGGAGAATTTTGTCT---CGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | ||| || ||| || | || | | ||| || || ||||| || | ||||||| Sbjct 6219886 CTATACAAGGTGAA-TTAGCCTTTGCCCTGTTG--AACAAGTCTCTAACCCTAGATGCTC 6219942 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 | | ||||||| |||| |||| || || || |||| | | || | ||| | Sbjct 6219943 CTACACCAACAAACATCTCTATGAACTCCGAGCCGGACAAAGAGAAAAACGGAACACCGG 6220002 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || |||| ||| | |||| || || || || ||||| || ||||| || | Sbjct 6220003 CTTCTCCGGCTATAGCCTTGGCCAAGAGAGTTTTTCCAGTTCCCGGCGGTCCAGTCAACA 6220062 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAAT 289293 || || ||||| | ||| ||||| || || | ||||||| ||| | || || ||| Sbjct 6220063 AGACGCCTTTTGGGATTTTAGCCCCCAAAG-CTGAGAATTTCTCTGGGGTTTTCAAGAAT 6220121 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || || || || || | || | || || || || |||||||||||| Sbjct 6220122 TCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 6220171 >seq1 Length=33132539 Score = 95.1 bits (104), Expect = 4e-14 Identities = 304/468 (65%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| |||| ||| | || | | | || ||| |||||| Sbjct 2327030 ATGTCTGCTCTGTTGGTTGCAGCCACTACGATAACACCAGTGTTACCCTCAAAACCATCC 2327089 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | |||||||| || ||||| ||||||||||| ||||| || Sbjct 2327090 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 2327140 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| || | ||||| | || Sbjct 2327141 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 2327199 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||||| | | || || || | || | || | || || |||| ||| || Sbjct 2327200 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 2327259 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | ||| ||||| || || Sbjct 2327260 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGC 2327319 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | ||||| || || || || || ||||| || || | | ||||| || || Sbjct 2327320 AATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 2327379 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| | | | | ||||||| |||| | ||| || || | ||| Sbjct 2327380 GGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2327439 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || || || ||| || |||||| ||||||| Sbjct 2327440 CATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCATCAAAAGT 2327487 Score = 91.5 bits (100), Expect = 4e-13 Identities = 279/418 (67%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| || || | ||||||| || ||||| || ||||||||| || Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 26184189 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || || || | |||||| | | | || ||||| ||||| || |||||||| Sbjct 26184190 TCC-----CATCCCA---GCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAT 26184241 Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| || | ||| | || || | | || || || || || | ||||| || Sbjct 26184242 ACAATACAAGGTGC-TTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACC 26184300 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 || ||| ||| | | || ||||| || || || | | || | ||| | ||| || Sbjct 26184301 AACACCCACAAAAAGCTCCACAAACTCCGAGGCCGCG-CAAGAGAAGAACGGTACTCCTG 26184359 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 | || || || || ||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 26184360 CCTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 26184418 Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291 ||| |||||| || | || || |||| || || | || || ||||| |||| || | Sbjct 26184419 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 26184476 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 | || |||| ||||| | || | || || | |||| || || ||||| || || Sbjct 26184477 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCACCAGCAACATCTGCGAA 26184534 >seq7 Length=24649197 Score = 87.8 bits (96), Expect = 5e-12 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 233259 TTAAAAATGT-TGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| || || |||||| ||||||||||| ||||| ||||||||||| |||| ||| Sbjct 9116652 TTCAAAAAGTGTGCAGCACCATGAGCAATCATGCAATCGCGTTCCATTTCTCCAAAACGG 9116593 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | || | ||| ||| | ||||| | ||||| Sbjct 9116592 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 9116533 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 | |||| | | ||| || || | |||||||||||||| |||| ||||| Sbjct 9116532 CGTCCACGGGAGTGAATCTTGTCATCAACCATATGCTTCAATCTCTGGTAATA 9116480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804475066552