Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 132 6e-25 seq7 116 5e-20 >seq5 Length=21221946 Score = 132 bits (146), Expect = 6e-25 Identities = 215/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| || || || ||||||||||| ||||| || || | | |||| | |||| Sbjct 3397539 CCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 3397598 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||| || || || ||||| ||||| ||||| ||||||| Sbjct 3397599 GAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGA 3397658 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807 | ||||| ||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 3397659 AGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGT 3397718 Query 869808 GGACGGTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTT 869866 | | ||| | | | | || || || || || |||||||||| || || ||||| ||| Sbjct 3397719 CGCGGTTGTCCTGTGAT-AGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTT 3397777 Query 869867 TTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGT 869924 |||||||| ||||| | || ||||| | || ||||| | ||| || | || |||||| Sbjct 3397778 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGGGT 3397836 Query 869925 TG 869926 || Sbjct 3397837 TG 3397838 >seq7 Length=24649197 Score = 116 bits (128), Expect = 5e-20 Identities = 191/275 (69%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || |||||||| ||||| ||||| ||||| ||||| | | |||| | || Sbjct 21840652 GAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGA 21840711 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| | || ||||| ||||| ||||| ||||| || Sbjct 21840712 ACATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAG 21840771 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809 || || |||||||| ||||| ||||| || ||||||| | || || |||||| | Sbjct 21840772 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAGTCG 21840831 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| ||| || || || ||||||||||||| || || ||||| || ||| Sbjct 21840832 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 21840891 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||| | || |||| |||| ||||| Sbjct 21840892 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 21840926 Score = 87.8 bits (96), Expect = 2e-11 Identities = 184/273 (67%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| | |||| |||||| || | ||| || ||||| | || || || Sbjct 21840372 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 21840431 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | ||| || || | || || || || ||||| || || || || ||| ||||| Sbjct 21840432 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 21840491 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | || | ||| || ||| | | ||| || ||||||||| ||||| ||||| Sbjct 21840492 AGCTACGATTCTCTCAGCGAAGCTTT-GAGATCC-----GTTGATCCATTTCATAGCCCA 21840545 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || || |||||| |||| | || | || ||||| ||||||||||| || || | || Sbjct 21840546 TTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 21840605 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| |||| || ||||||| ||||| Sbjct 21840606 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 21840638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107082082980632