Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 132 6e-25
seq7 116 5e-20
>seq5
Length=21221946
Score = 132 bits (146), Expect = 6e-25
Identities = 215/302 (71%), Gaps = 8/302 (3%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||||||||| || || || ||||||||||| ||||| || || | | |||| | ||||
Sbjct 3397539 CCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 3397598
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| || || |||||| || || || ||||| ||||| ||||| |||||||
Sbjct 3397599 GAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGA 3397658
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807
| ||||| ||||| || ||||| ||||| || || ||||| |||| ||||||
Sbjct 3397659 AGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGT 3397718
Query 869808 GGACGGTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTT 869866
| | ||| | | | | || || || || || |||||||||| || || ||||| |||
Sbjct 3397719 CGCGGTTGTCCTGTGAT-AGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTT 3397777
Query 869867 TTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGT 869924
|||||||| ||||| | || ||||| | || ||||| | ||| || | || ||||||
Sbjct 3397778 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGGGT 3397836
Query 869925 TG 869926
||
Sbjct 3397837 TG 3397838
>seq7
Length=24649197
Score = 116 bits (128), Expect = 5e-20
Identities = 191/275 (69%), Gaps = 3/275 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| || || |||||||| ||||| ||||| ||||| ||||| | | |||| | ||
Sbjct 21840652 GAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGA 21840711
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| ||| | || ||||| ||||| ||||| ||||| ||
Sbjct 21840712 ACATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAG 21840771
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809
|| || |||||||| ||||| ||||| || ||||||| | || || |||||| |
Sbjct 21840772 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAGTCG 21840831
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|||| ||| || || || ||||||||||||| || || ||||| || |||
Sbjct 21840832 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 21840891
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||||||||||| | || |||| |||| |||||
Sbjct 21840892 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 21840926
Score = 87.8 bits (96), Expect = 2e-11
Identities = 184/273 (67%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||||||||| | |||| |||||| || | ||| || ||||| | || || ||
Sbjct 21840372 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 21840431
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| | ||| || || | || || || || ||||| || || || || ||| |||||
Sbjct 21840432 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 21840491
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | || | ||| || ||| | | ||| || ||||||||| ||||| |||||
Sbjct 21840492 AGCTACGATTCTCTCAGCGAAGCTTT-GAGATCC-----GTTGATCCATTTCATAGCCCA 21840545
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
|| || |||||| |||| | || | || ||||| ||||||||||| || || | ||
Sbjct 21840546 TTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 21840605
Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
||| |||| || ||||||| |||||
Sbjct 21840606 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 21840638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107082082980632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |