Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq7 102 7e-17 seq6 91.5 1e-13 seq4 91.5 1e-13 seq3 86.0 5e-12 seq2 86.0 5e-12 >seq1 Length=33132539 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| |||| || | ||||| |||||||||||| | ||| ||| | Sbjct 29080614 ATGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 29080673 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||| ||||| | || ||||||| Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || ||||||||||| ||||||| |||| | || ||||||||| Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 29080793 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||||||||| || Sbjct 29080794 ATCCAAAAAGAATCAAC 29080810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| |||| || || || || ||| | || || | Sbjct 10396895 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 10396954 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| ||||||| ||||||||||| | || |||| Sbjct 10396955 TCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCGGAT 10397014 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | | || | || || ||||| |||| |||| |||||| | || |||||| Sbjct 10397015 CAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGATTAC 10397074 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || ||| | || ||||| | | ||| |||| || Sbjct 10397075 AACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124 >seq7 Length=24649197 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| |||||||| |||||| | ||||| ||||||||||| | ||| ||| || | Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| |||||| ||||||||||| | || ||| || Sbjct 18993838 -GACACCATTGACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| |||||||| | || || || || || ||||||| | || | ||||||||||| Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| || || || | ||| | ||||| Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTT 18993687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||||||||| ||||| | || |||| |||||||||| | ||| ||| || | Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| |||||| || || |||| | || | ||| || Sbjct 18994066 -GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCA 18994008 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | || || || || || ||||||| |||| | || |||||||| Sbjct 18994007 GCAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAA 18993948 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || |||||||| || Sbjct 18993947 CATCCAGAAAGAATCAAC 18993930 >seq6 Length=25113588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| || Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || ||| Sbjct 905814 GAC---ACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 905758 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||| | ||| ||||| ||||| ||||||| ||||| | || || ||| Sbjct 905757 CAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTAC 905698 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 905697 AACATCCAGAAGGAGTCGAC 905678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || || || |||||| | ||||| || || || ||| | || ||| || || Sbjct 22886019 ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCT 22886078 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||| |||||| | || |||| Sbjct 22886079 GAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 22886135 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||||| || || || ||| ||||||||| | | || |||| |||||| Sbjct 22886136 CAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTAC 22886195 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| || | ||| |||| | || || || || || Sbjct 22886196 AACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGG 22886245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || || || |||||| | ||||| || || || ||| | || ||| || || Sbjct 23069028 ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCT 23069087 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||| |||||| | || |||| Sbjct 23069088 GAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 23069144 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||||| || || || ||| ||||||||| | | || |||| |||||| Sbjct 23069145 CAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTAC 23069204 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| || | ||| |||| | || || || || || Sbjct 23069205 AACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGG 23069254 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| || ||||| || || || || || || || || | || |||| || Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| |||||||| || | || ||| Sbjct 22758735 GAC---ACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGAC 22758679 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | || | ||| || ||||| || || |||| |||||| |||| || ||| Sbjct 22758678 CAGCAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTAC 22758619 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| || || ||||| | ||| ||||||| Sbjct 22758618 AACATTCAGAAGGAGTCTACCCTTCACTTGGTGTT 22758584 >seq4 Length=23328337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| || Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || ||| Sbjct 15771735 GAC---ACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 15771679 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||| | ||| ||||| ||||| ||||||| ||||| | || || ||| Sbjct 15771678 CAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTAC 15771619 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 15771618 AACATCCAGAAGGAGTCGAC 15771599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | |||||||| ||||| ||||| | || ||||| ||||| || |||| || Sbjct 15772030 ATTTCAGATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGA 15771971 Query 110326 GC---CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 | ||||| || ||| | | || || |||||| ||||| |||||| | || Sbjct 15771970 GAGCTCTGAC---ACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCC 15771914 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 ||| || || ||| | || | || ||||||||||| || |||| | || |||| Sbjct 15771913 TCCGGACCAGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGC 15771854 Query 110443 GGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || |||||||| || | ||| |||| Sbjct 15771853 CGATTACAATATCCAGAAAGAATCAACCCTCCACTTGGT 15771815 >seq3 Length=24464547 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 110368 CAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGA 110427 ||| |||||| | || | || || ||| ||||||| | ||||||||||||||| ||||| Sbjct 3877285 CAAGGAAGGCATTCCTTTAGACCAGCAATGACTTATCTTTGCGGGTAAACAGCTCGAGGA 3877226 Query 110428 TGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 || | || |||| ||||||| ||| || ||||| || || | ||| |||| |||| Sbjct 3877225 TGGCCTTACCTTGGCTGATTACAGCATCCAGAAAGAGTCAACTCTCCACTTGGTTCTAAG 3877166 Query 110488 ACTGCGAGGGGG 110499 || |||| || Sbjct 3877165 GTTGAGAGGTGG 3877154 >seq2 Length=19320864 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | ||||| |||||||| || | || || | | Sbjct 9215025 ATGCAGATCTTTGTGAAGACCCTTACCGGGAAAACCATAACTTTGGAGGTTGAAAGTTCC 9214966 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| ||||| ||||| || || | || || ||| Sbjct 9214965 GATACTATCGATAATGTTAAAGCTAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAA 9214906 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || |||||||| ||||||| | || |||| ||||||||| Sbjct 9214905 CAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGACGGACTTTGGCTGATTACAAC 9214846 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || |||||||| | ||| | ||||| Sbjct 9214845 ATCCAGAAGGAATCTACCCTTCACCTTGTGTT 9214814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||| ||||| | || ||||||||| ||||| || | ||| ||||| Sbjct 9126616 AAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAACAGAGACTCATCTTTGCCGGTAAG 9126557 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476 ||||| ||||||| | || | || ||||||||||| |||||||| ||||| | || Sbjct 9126556 CAGCTTGAGGATGGTCGTACTTTAGCTGATTACAACATCCAAAAAGAGTCTACCCTCCAT 9126497 Query 110477 ATGGTG 110482 ||||| Sbjct 9126496 TTGGTG 9126491 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || |||||||||||||| | || || | Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| |||||| || || ||||| | || |||||| Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||||| ||||| | | ||| | || |||||||| Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| | || ||||| Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9126719 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || |||||||||||||| | || || | Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| |||||| || || ||||| | || |||||| Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||||| ||||| | | ||| | || |||||||| Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| | || ||||| Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9215500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838098071128