Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq7 102 7e-17
seq6 91.5 1e-13
seq4 91.5 1e-13
seq3 86.0 5e-12
seq2 86.0 5e-12
>seq1
Length=33132539
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| ||||| |||| || | ||||| |||||||||||| | ||| ||| |
Sbjct 29080614 ATGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 29080673
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || ||| ||||| ||||| ||||| | || |||||||
Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||||| || | || ||||||||||| ||||||| |||| | || |||||||||
Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 29080793
Query 110453 ATTCAAAAAGAATCTAC 110469
|| ||||||||||| ||
Sbjct 29080794 ATCCAAAAAGAATCAAC 29080810
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|||||||| || || || ||||| |||| || || || || ||| | || || |
Sbjct 10396895 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 10396954
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | | || ||| ||||||| ||||||||||| | || ||||
Sbjct 10396955 TCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCGGAT 10397014
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| ||| | | || | || || ||||| |||| |||| |||||| | || ||||||
Sbjct 10397015 CAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGATTAC 10397074
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||||| ||||| || ||| | || ||||| | | ||| |||| ||
Sbjct 10397075 AACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124
>seq7
Length=24649197
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
||||| |||||||| |||||| | ||||| ||||||||||| | ||| ||| || |
Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| || | | | | || ||| |||||| ||||||||||| | || ||| ||
Sbjct 18993838 -GACACCATTGACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
||| |||||||| | || || || || || ||||||| | || | |||||||||||
Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
||| ||||| || || || | ||| | |||||
Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTT 18993687
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
|||||||||||||| ||||| | || |||| |||||||||| | ||| ||| || |
Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| || | | | | || ||| |||||| || || |||| | || | ||| ||
Sbjct 18994066 -GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCA 18994008
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| |||||||| | || || || || || ||||||| |||| | || ||||||||
Sbjct 18994007 GCAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTACAA 18993948
Query 110452 CATTCAAAAAGAATCTAC 110469
||| || |||||||| ||
Sbjct 18993947 CATCCAGAAAGAATCAAC 18993930
>seq6
Length=25113588
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329
||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| ||
Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| ||| | | | | || ||| |||||| ||||||||||| | || |||
Sbjct 905814 GAC---ACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 905758
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||| | ||| ||||| ||||| ||||||| ||||| | || || |||
Sbjct 905757 CAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTAC 905698
Query 110450 AACATTCAAAAAGAATCTAC 110469
||||| || || || || ||
Sbjct 905697 AACATCCAGAAGGAGTCGAC 905678
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || || || |||||| | ||||| || || || ||| | || ||| || ||
Sbjct 22886019 ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCT 22886078
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| ||||| ||||| |||||| | || ||||
Sbjct 22886079 GAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 22886135
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||||| || || || ||| ||||||||| | | || |||| ||||||
Sbjct 22886136 CAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTAC 22886195
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || ||||| || | ||| |||| | || || || || ||
Sbjct 22886196 AACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGG 22886245
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || || || |||||| | ||||| || || || ||| | || ||| || ||
Sbjct 23069028 ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCT 23069087
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| ||||| ||||| |||||| | || ||||
Sbjct 23069088 GAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 23069144
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||||| || || || ||| ||||||||| | | || |||| ||||||
Sbjct 23069145 CAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTAC 23069204
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || ||||| || | ||| |||| | || || || || ||
Sbjct 23069205 AACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGG 23069254
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329
|||||||| || ||||| || || || || || || || || | || |||| ||
Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| ||||| |||||||| || | || |||
Sbjct 22758735 GAC---ACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGAC 22758679
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || ||| | || | ||| || ||||| || || |||| |||||| |||| || |||
Sbjct 22758678 CAGCAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTAC 22758619
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || ||||| | ||| |||||||
Sbjct 22758618 AACATTCAGAAGGAGTCTACCCTTCACTTGGTGTT 22758584
>seq4
Length=23328337
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329
||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| ||
Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| ||| | | | | || ||| |||||| ||||||||||| | || |||
Sbjct 15771735 GAC---ACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 15771679
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||| | ||| ||||| ||||| ||||||| ||||| | || || |||
Sbjct 15771678 CAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTAC 15771619
Query 110450 AACATTCAAAAAGAATCTAC 110469
||||| || || || || ||
Sbjct 15771618 AACATCCAGAAGGAGTCGAC 15771599
Score = 86.0 bits (94), Expect = 5e-12
Identities = 151/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325
|||| | |||||||| ||||| ||||| | || ||||| ||||| || |||| ||
Sbjct 15772030 ATTTCAGATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGA 15771971
Query 110326 GC---CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382
| ||||| || ||| | | || || |||||| ||||| |||||| | ||
Sbjct 15771970 GAGCTCTGAC---ACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCC 15771914
Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442
||| || || ||| | || | || ||||||||||| || |||| | || ||||
Sbjct 15771913 TCCGGACCAGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGC 15771854
Query 110443 GGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||||| || || |||||||| || | ||| ||||
Sbjct 15771853 CGATTACAATATCCAGAAAGAATCAACCCTCCACTTGGT 15771815
>seq3
Length=24464547
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 110368 CAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGA 110427
||| |||||| | || | || || ||| ||||||| | ||||||||||||||| |||||
Sbjct 3877285 CAAGGAAGGCATTCCTTTAGACCAGCAATGACTTATCTTTGCGGGTAAACAGCTCGAGGA 3877226
Query 110428 TGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487
|| | || |||| ||||||| ||| || ||||| || || | ||| |||| ||||
Sbjct 3877225 TGGCCTTACCTTGGCTGATTACAGCATCCAGAAAGAGTCAACTCTCCACTTGGTTCTAAG 3877166
Query 110488 ACTGCGAGGGGG 110499
|| |||| ||
Sbjct 3877165 GTTGAGAGGTGG 3877154
>seq2
Length=19320864
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || || | ||||| |||||||| || | || || | |
Sbjct 9215025 ATGCAGATCTTTGTGAAGACCCTTACCGGGAAAACCATAACTTTGGAGGTTGAAAGTTCC 9214966
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| ||| | || ||| ||||| ||||| || || | || || |||
Sbjct 9214965 GATACTATCGATAATGTTAAAGCTAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAA 9214906
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||||| || | ||| || |||||||| ||||||| | || |||| |||||||||
Sbjct 9214905 CAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGACGGACTTTGGCTGATTACAAC 9214846
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|| || || |||||||| | ||| | |||||
Sbjct 9214845 ATCCAGAAGGAATCTACCCTTCACCTTGTGTT 9214814
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416
|||||| ||||| ||||| | || ||||||||| ||||| || | ||| |||||
Sbjct 9126616 AAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAACAGAGACTCATCTTTGCCGGTAAG 9126557
Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476
||||| ||||||| | || | || ||||||||||| |||||||| ||||| | ||
Sbjct 9126556 CAGCTTGAGGATGGTCGTACTTTAGCTGATTACAACATCCAAAAAGAGTCTACCCTCCAT 9126497
Query 110477 ATGGTG 110482
|||||
Sbjct 9126496 TTGGTG 9126491
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || || || || |||||||||||||| | || || |
Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| | | | || ||| |||||| || || ||||| | || ||||||
Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || ||||| | ||| ||||| ||||| ||||| | | ||| | || ||||||||
Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || ||||| ||||| | || |||||
Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9126719
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || || || || |||||||||||||| | || || |
Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| | | | || ||| |||||| || || ||||| | || ||||||
Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || ||||| | ||| ||||| ||||| ||||| | | ||| | || ||||||||
Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || ||||| ||||| | || |||||
Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9215500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412838098071128
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