Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 129 9e-24 >seq7 Length=24649197 Score = 129 bits (142), Expect = 9e-24 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 796173 CATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAG 796232 |||||| ||| | || ||||| ||||| ||||| ||||| || |||||||| Sbjct 21840720 CATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAAGGCGAG 21840779 Query 796233 GACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGA---CCCAGTGGACCGTGTC 796289 |||||| ||||| |||||||| ||||||| | || ||| |||||| | |||| Sbjct 21840780 GACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAGTCGCGATTGTC 21840839 Query 796290 GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTC 796349 ||| ||||| || ||||||||||| ||||| || ||||| || ||||||||||| Sbjct 21840840 TTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTGTACATCTC 21840899 Query 796350 CCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGAT-TGGGGTT 796397 ||| ||| || |||| |||| ||||||| | || |||| ||| ||| Sbjct 21840900 CCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948 Score = 123 bits (136), Expect = 4e-22 Identities = 223/325 (69%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | ||||||||||| || ||| || ||||| | || || || Sbjct 21840372 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 21840431 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| || || | ||| || || || ||||| || || || || ||| ||||| Sbjct 21840432 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 21840491 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| | ||| || || | | || || ||||||||| ||||| ||||| Sbjct 21840492 AGCTACGATTCTCTCAGCGAAGCTTTG-AGATCC-----GTTGATCCATTTCATAGCCCA 21840545 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||||| |||||| |||| | || | || ||||| ||||||||||| || || |||| Sbjct 21840546 TTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 21840605 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| ||| ||||||| ||||| || |||| || || || || || Sbjct 21840606 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 21840665 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||| ||||| || || ||| Sbjct 21840666 GATCGCGATTTGGAATCCGTAGAAG 21840690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916172363305544