Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 129 9e-24
>seq7
Length=24649197
Score = 129 bits (142), Expect = 9e-24
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 796173 CATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAG 796232
|||||| ||| | || ||||| ||||| ||||| ||||| || ||||||||
Sbjct 21840720 CATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAAGGCGAG 21840779
Query 796233 GACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGA---CCCAGTGGACCGTGTC 796289
|||||| ||||| |||||||| ||||||| | || ||| |||||| | ||||
Sbjct 21840780 GACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCCAGTCGCGATTGTC 21840839
Query 796290 GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTC 796349
||| ||||| || ||||||||||| ||||| || ||||| || |||||||||||
Sbjct 21840840 TTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTGTACATCTC 21840899
Query 796350 CCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGAT-TGGGGTT 796397
||| ||| || |||| |||| ||||||| | || |||| ||| |||
Sbjct 21840900 CCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948
Score = 123 bits (136), Expect = 4e-22
Identities = 223/325 (69%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||||||||| | ||||||||||| || ||| || ||||| | || || ||
Sbjct 21840372 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 21840431
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| | ||| || || | ||| || || || ||||| || || || || ||| |||||
Sbjct 21840432 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 21840491
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| |||| | ||| || || | | || || ||||||||| ||||| |||||
Sbjct 21840492 AGCTACGATTCTCTCAGCGAAGCTTTG-AGATCC-----GTTGATCCATTTCATAGCCCA 21840545
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
||||| |||||| |||| | || | || ||||| ||||||||||| || || ||||
Sbjct 21840546 TTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 21840605
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
||| |||| ||| ||||||| ||||| || |||| || || || || ||
Sbjct 21840606 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 21840665
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
||| ||||| ||||| || || |||
Sbjct 21840666 GATCGCGATTTGGAATCCGTAGAAG 21840690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916172363305544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |