Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq4 107 2e-18
seq2 95.1 1e-14
seq7 86.0 5e-12
>seq6
Length=25113588
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| |||
Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| ||| | | | | || ||| ||||||| || |||||||| | || ||| ||
Sbjct 905814 -GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 905756
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | ||| ||||| ||||| ||||| | | ||| | || ||||||||
Sbjct 905755 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAA 905696
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 905695 CATCCAGAAGGAGTCGAC 905678
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || ||||| || || || || || || || || | || |||| |||
Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| ||||| || ||||| || | || ||| ||
Sbjct 22758735 -GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCA 22758677
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | || | ||| || ||||| || || || | || ||| |||| ||||||||
Sbjct 22758676 GCAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTACAA 22758617
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|||||| ||||||||||| | ||| ||||||||
Sbjct 22758616 CATTCAGAAGGAGTCTACCCTTCACTTGGTGTTG 22758583
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| || ||| | || || ||||| || ||| | || ||| |||
Sbjct 8749234 ATGCAAATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 8749175
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || ||| |||||| |||||||| || | || ||| ||
Sbjct 8749174 -GACACCATTGACAATGTCAAAGCTAAGATTCAGGATAAAGAGGGAATCCCACCGGACCA 8749116
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | ||| ||||| ||||| ||||| | ||| |||| ||||||||
Sbjct 8749115 GCAGAGGCTTATCTTTGCAGGTAAGCAGCTAGAGGATGGTCGCACACTGGCTGACTACAA 8749056
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| ||||| ||||| || | || |||||
Sbjct 8749055 CATCCAAAAAGAGTCAACCCTCCATTTGGTG 8749025
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| ||||| || || || || || || | || |||| |||
Sbjct 23403963 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 23404022
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| ||||| || ||||| || | || ||| ||
Sbjct 23404023 -GACACCATCGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCA 23404081
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | || || || || || || || | || ||| |||| || |||||
Sbjct 23404082 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAA 23404141
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|||||| ||||||||||| | ||| |||| ||| | |||| || ||
Sbjct 23404142 CATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 23404189
>seq4
Length=23328337
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| |||
Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| ||| | | | | || ||| ||||||| || |||||||| | || ||| ||
Sbjct 15771735 -GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 15771677
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | ||| ||||| ||||| ||||| | | ||| | || ||||||||
Sbjct 15771676 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAA 15771617
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 15771616 CATCCAGAAGGAGTCGAC 15771599
>seq2
Length=19320864
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| || || || || |||||||||||||| | || || |
Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | || ||| |||||| ||||| ||||| | || |||||||
Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||| | ||| ||||| ||||| ||||||| ||| | || || |||||
Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || || |||||||| | || |||||
Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9126719
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| || || || || |||||||||||||| | || || |
Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | || ||| |||||| ||||| ||||| | || |||||||
Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||| | ||| ||||| ||||| ||||||| ||| | || || |||||
Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || || |||||||| | || |||||
Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9215500
>seq7
Length=24649197
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||| |||||| | || || ||||||||||| | ||| ||| |||
Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || ||| |||||| || |||||||| | || ||| ||
Sbjct 18993838 -GACACCATTGACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||||||| | || || || || || ||||| | || | ||||| |||||
Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| ||||||||||| || | ||| | ||||||
Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTTG 18993686
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
||||| || || ||||| ||| | || ||||| ||||| || | || || | |||
Sbjct 18994810 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTC- 18994752
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG---CGTGCCCGTGGA 107671
||| || | | | | || || |||||| || || ||||| | |||| |||
Sbjct 18994751 CGACACAATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCTGCC---GGA 18994695
Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731
|||||||||||||| | ||| |||||||| || ||||||| || |||| || ||
Sbjct 18994694 CCAGCAGAGACTTATCTTTGCCGGTAAACAACTTGAGGACGGTCGTACTTTGGCTGATTA 18994635
Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||| ||||| |||||||| || | ||| |||| | || ||| |||| ||
Sbjct 18994634 CAATATTCAGAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGAGAGGTGG 18994584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398873416527544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |