Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq4 107 2e-18 seq2 95.1 1e-14 seq7 86.0 5e-12 >seq6 Length=25113588 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| ||| Sbjct 905874 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 905815 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || ||| ||||||| || |||||||| | || ||| || Sbjct 905814 -GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 905756 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||| ||||| | | ||| | || |||||||| Sbjct 905755 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAA 905696 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 905695 CATCCAGAAGGAGTCGAC 905678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| || || || || || || || || | || |||| ||| Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| || ||||| || | || ||| || Sbjct 22758735 -GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCA 22758677 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||| || || || | || ||| |||| |||||||| Sbjct 22758676 GCAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAGAACTTTGGCTGACTACAA 22758617 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| ||||||||||| | ||| |||||||| Sbjct 22758616 CATTCAGAAGGAGTCTACCCTTCACTTGGTGTTG 22758583 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || ||||| || ||| | || ||| ||| Sbjct 8749234 ATGCAAATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 8749175 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| |||||||| || | || ||| || Sbjct 8749174 -GACACCATTGACAATGTCAAAGCTAAGATTCAGGATAAAGAGGGAATCCCACCGGACCA 8749116 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||| ||||| | ||| |||| |||||||| Sbjct 8749115 GCAGAGGCTTATCTTTGCAGGTAAGCAGCTAGAGGATGGTCGCACACTGGCTGACTACAA 8749056 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| ||||| ||||| || | || ||||| Sbjct 8749055 CATCCAAAAAGAGTCAACCCTCCATTTGGTG 8749025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| ||||| || || || || || || | || |||| ||| Sbjct 23403963 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 23404022 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| || ||||| || | || ||| || Sbjct 23404023 -GACACCATCGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCA 23404081 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || || || || || | || ||| |||| || ||||| Sbjct 23404082 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAA 23404141 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| | ||| |||| ||| | |||| || || Sbjct 23404142 CATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 23404189 >seq4 Length=23328337 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| |||||||| | ||| ||| ||| Sbjct 15771795 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 15771736 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || ||| ||||||| || |||||||| | || ||| || Sbjct 15771735 -GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 15771677 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||| ||||| | | ||| | || |||||||| Sbjct 15771676 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAA 15771617 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 15771616 CATCCAGAAGGAGTCGAC 15771599 >seq2 Length=19320864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || |||||||||||||| | || || | Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| |||||| ||||| ||||| | || ||||||| Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||| ||||| ||||||| ||| | || || ||||| Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || |||||||| | || ||||| Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9126719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || |||||||||||||| | || || | Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| |||||| ||||| ||||| | || ||||||| Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||| ||||| ||||||| ||| | || || ||||| Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || |||||||| | || ||||| Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTG 9215500 >seq7 Length=24649197 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| |||||| | || || ||||||||||| | ||| ||| ||| Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || |||||||| | || ||| || Sbjct 18993838 -GACACCATTGACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||||| | || || || || || ||||| | || | ||||| ||||| Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| ||||||||||| || | ||| | |||||| Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTTG 18993686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || || ||||| ||| | || ||||| ||||| || | || || | ||| Sbjct 18994810 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTC- 18994752 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG---CGTGCCCGTGGA 107671 ||| || | | | | || || |||||| || || ||||| | |||| ||| Sbjct 18994751 CGACACAATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCTGCC---GGA 18994695 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||||||||||| | ||| |||||||| || ||||||| || |||| || || Sbjct 18994694 CCAGCAGAGACTTATCTTTGCCGGTAAACAACTTGAGGACGGTCGTACTTTGGCTGATTA 18994635 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||| |||||||| || | ||| |||| | || ||| |||| || Sbjct 18994634 CAATATTCAGAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGAGAGGTGG 18994584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873416527544