Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 9e-19
seq6 87.8 3e-12
seq4 84.2 3e-11
>seq1
Length=33132539
Score = 109 bits (120), Expect = 9e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| |||||||| || || | || || ||||| ||||| | || || || | |
Sbjct 29080615 TGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCAG 29080674
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || || ||| ||| || ||| || ||||| || || || |||||||
Sbjct 29080675 ACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAAC 29080734
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||||| || || || |||||||| | || ||| | ||||| | ||||||| || |
Sbjct 29080735 AGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAACA 29080794
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| ||| ||||| | || | || | ||||| ||||
Sbjct 29080795 TCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGGTA 29080842
>seq6
Length=25113588
Score = 87.8 bits (96), Expect = 3e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
|| ||||||||||| || || || || ||| | || || || |||||||| |||| |||
Sbjct 906006 AAGGAAGGCATTCCTCCGGACCAGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGAT 905947
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246
| | || || || ||||| ||||| || |||||||| || |||| || || | ||
Sbjct 905946 GGTCGTACCTTGACCGATTACAATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGT 905887
Query 146247 TTAAGAGGAGGTA 146259
|||||||| ||||
Sbjct 905886 TTAAGAGGTGGTA 905874
>seq4
Length=23328337
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||
Sbjct 16908202 AAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGAT 16908261
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || ||| | ||||| || || || ||||| || ||| | ||| | || ||
Sbjct 16908262 GGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTT 16908317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786159560352320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |