Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 109 9e-19 seq6 87.8 3e-12 seq4 84.2 3e-11 >seq1 Length=33132539 Score = 109 bits (120), Expect = 9e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||||| || || | || || ||||| ||||| | || || || | | Sbjct 29080615 TGCAGATATTCATCAAGACGCTCACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCAG 29080674 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| ||| || ||| || ||||| || || || ||||||| Sbjct 29080675 ACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAAC 29080734 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || |||||||| | || ||| | ||||| | ||||||| || | Sbjct 29080735 AGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAACA 29080794 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | || | || | ||||| |||| Sbjct 29080795 TCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGGTA 29080842 >seq6 Length=25113588 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||||||||| || || || || ||| | || || || |||||||| |||| ||| Sbjct 906006 AAGGAAGGCATTCCTCCGGACCAGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGAT 905947 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | | || || || ||||| ||||| || |||||||| || |||| || || | || Sbjct 905946 GGTCGTACCTTGACCGATTACAATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGT 905887 Query 146247 TTAAGAGGAGGTA 146259 |||||||| |||| Sbjct 905886 TTAAGAGGTGGTA 905874 >seq4 Length=23328337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||| Sbjct 16908202 AAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGAT 16908261 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||| | ||||| || || || ||||| || ||| | ||| | || || Sbjct 16908262 GGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTT 16908317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786159560352320