Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq1 95.1 1e-14 seq2 86.0 6e-12 >seq6 Length=25113588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | ||| || || | || |||||||| || |||||||||||| | Sbjct 10622088 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 10622029 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| || |||||||| || |||| | | |||||| || |||| Sbjct 10622028 AAAGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGA 10621969 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| ||| || | | || | ||||| | | || || Sbjct 10621968 ATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 10621909 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | |||||| || || |||||||| Sbjct 10621908 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || || || | ||| | || | ||| | |||||| |||||||| ||||||||||| ||| Sbjct 10622544 CCACCACGGAGACGAAGTACAAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCAGCT 10622485 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || || || ||||| ||||| |||| || | ||||| || || || Sbjct 10622484 -AGTGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGG 10622426 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| || || | | || | |||||||| | || || Sbjct 10622425 GATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTCTCAAC 10622366 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 10622365 CTCCAAAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATA 10622317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || || |||| |||||| || || || ||||||||||| | Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || || || |||||| | ||||| || ||||| Sbjct 23404129 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404070 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| || || ||| | | || | ||||| | | || || Sbjct 23404069 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 23404010 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || ||||| || || || || || |||||| Sbjct 23404009 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATA 23403962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| ||||| ||||| || |||||||||||| | Sbjct 22886756 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 22886697 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || || || ||||| |||| ||||| ||||| || ||| Sbjct 22886696 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 22886637 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 22886636 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACT 22886577 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| || | ||||| |||||||| || || ||||| || |||||| || Sbjct 22886576 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 22886526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| ||||| ||||| || |||||||||||| | Sbjct 23069765 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 23069706 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || || || ||||| |||| ||||| ||||| || ||| Sbjct 23069705 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 23069646 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 23069645 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACT 23069586 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| || | ||||| |||||||| || || ||||| || |||||| || Sbjct 23069585 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 23069535 >seq1 Length=33132539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||| | || ||||||| || || ||||| || ||||||||||| Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || || |||| | ||||||||||| || || Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 10396945 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 10396944 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898 >seq2 Length=19320864 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | ||| ||||| | ||| ||||| || || || |||||||| | Sbjct 9126930 CCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCC 9126989 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||||| |||||| | ||||| || ||||| Sbjct 9126990 AAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGA 9127049 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| || | | || | ||||| | | || || Sbjct 9127050 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 9127109 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 9127110 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | ||| ||||| | ||| ||||| || || || |||||||| | Sbjct 9215711 CCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCC 9215770 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||||| |||||| | ||||| || ||||| Sbjct 9215771 AAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGA 9215830 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| || | | || | ||||| | | || || Sbjct 9215831 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 9215890 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 9215891 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488539749667200