Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 1e-14
seq1 95.1 1e-14
seq2 86.0 6e-12
>seq6
Length=25113588
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| |||||| | ||| || || | || |||||||| || |||||||||||| |
Sbjct 10622088 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 10622029
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| || |||||||| || |||| | | |||||| || ||||
Sbjct 10622028 AAAGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGA 10621969
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| ||| ||| || | | || | ||||| | | || ||
Sbjct 10621968 ATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 10621909
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| || || ||||||||
Sbjct 10621908 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243
|| || || | ||| | || | ||| | |||||| |||||||| ||||||||||| |||
Sbjct 10622544 CCACCACGGAGACGAAGTACAAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCAGCT 10622485
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| ||| | || || || ||||| ||||| |||| || | ||||| || || ||
Sbjct 10622484 -AGTGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGG 10622426
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||| ||||| ||| || || | | || | |||||||| | || ||
Sbjct 10622425 GATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTCTCAAC 10622366
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | ||||||||||||| || || ||||| || ||||||
Sbjct 10622365 CTCCAAAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATA 10622317
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | |||||| || || |||| |||||| || || || ||||||||||| |
Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| ||||| || || || |||||| | ||||| || |||||
Sbjct 23404129 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404070
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || |||||||| || || ||| | | || | ||||| | | || ||
Sbjct 23404069 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 23404010
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | ||||| || ||||| || || || || || ||||||
Sbjct 23404009 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATA 23403962
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | || || |||| ||||| ||||| || |||||||||||| |
Sbjct 22886756 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 22886697
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| || || || || || ||||| |||| ||||| ||||| || |||
Sbjct 22886696 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 22886637
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| || || || | | || | ||||| | | || |||
Sbjct 22886636 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACT 22886577
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| || | ||||| |||||||| || || ||||| || |||||| ||
Sbjct 22886576 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 22886526
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | || || |||| ||||| ||||| || |||||||||||| |
Sbjct 23069765 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCC 23069706
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| || || || || || ||||| |||| ||||| ||||| || |||
Sbjct 23069705 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGGG 23069646
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| || || || | | || | ||||| | | || |||
Sbjct 23069645 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACT 23069586
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| || | ||||| |||||||| || || ||||| || |||||| ||
Sbjct 23069585 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 23069535
>seq1
Length=33132539
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||||| | ||| | || ||||||| || || ||||| || |||||||||||
Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||| || ||||| | |||||| || || |||| | ||||||||||| || ||
Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||| || ||| | | || | ||||||| | ||| ||
Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 10396945
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | ||||| || || | ||||| ||||| || |||||
Sbjct 10396944 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898
>seq2
Length=19320864
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| ||| | | ||| ||||| | ||| ||||| || || || |||||||| |
Sbjct 9126930 CCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCC 9126989
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| | ||||||||||| |||||| | ||||| || |||||
Sbjct 9126990 AAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGA 9127049
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| ||| || | | || | ||||| | | || ||
Sbjct 9127050 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 9127109
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| ||||| ||||||||
Sbjct 9127110 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| ||| | | ||| ||||| | ||| ||||| || || || |||||||| |
Sbjct 9215711 CCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCC 9215770
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| | ||||||||||| |||||| | ||||| || |||||
Sbjct 9215771 AAGGTACGACCATCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGA 9215830
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| ||| || | | || | ||||| | | || ||
Sbjct 9215831 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 9215890
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| ||||| ||||||||
Sbjct 9215891 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488539749667200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |