Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq5 80.6 7e-11 >seq5 Length=21221946 Score = 80.6 bits (88), Expect = 7e-11 Identities = 171/255 (67%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 1376 TTACGGCAGAATAGCTCCAAGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGC 1435 ||||| ||||| || || ||||| ||| | || || |||| |||||||| || || Sbjct 12986936 TTACGCGAGAATTGCGCCGAGATCGGGTTTGGCTTGGAAACATTCGATTGATGTTGGTGC 12986877 Query 1436 TGGAGTTATTGACCCTGATTATCGTGGAAGTATCAGTGTTGTTTTATTTAATCATTCGGA 1495 ||||| ||||| |||||||| | ||| | | |||| |||| ||||||||||| || Sbjct 12986876 AGGAGTGATTGATGCTGATTATAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGA 12986817 Query 1496 TGTGCCTTTCCATGTGTCGAGGGGAGACAGAATAGCTCAGTTAATTTGTGAGCGGGCAGC 1555 ||| ||| | ||| ||||| |||| || || || ||| ||| | | Sbjct 12986816 TGTTGATTTTGAGGTGAAATTCGGAGATCGAATCGCGCAATTGATTATCGAGAAGATTGT 12986757 Query 1556 CACACCAATTTTGGTGGAGGTTGCCGACATAGATAATAACACTGCTCGGGGCACTAGAGG 1615 || || || | || ||||||| || | ||| || |||| ||| || | | || Sbjct 12986756 GACTCCTGTTGTTGTTGAGGTTGAAGATTTGGATGAT---ACTGTTCGTGGTGATGGTGG 12986700 Query 1616 ATTTGGATCTACTGG 1630 ||||| |||||||| Sbjct 12986699 TTTTGGTTCTACTGG 12986685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139826044328192