Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq7 170 5e-37
seq5 93.3 1e-13
>seq7
Length=24649197
Score = 170 bits (188), Expect = 5e-37
Identities = 331/482 (69%), Gaps = 15/482 (3%)
Strand=Plus/Minus
Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859
|| ||||||||||||||||| |||||||| | | ||| | | || || || ||
Sbjct 21840557 AAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GAT--CTCAAAGCTTCGCTGAGAG 21840502
Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918
| | |||||||||||||| ||||||||||||||||| || ||| ||||| ||| | || |
Sbjct 21840501 AATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTT-TGTTCGATAT 21840443
Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978
| ||| | ||||| || || || |||||||||||| |||| || || |||| || ||||
Sbjct 21840442 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGA 21840383
Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----T 132034
|||| |||| | || ||| || ||| || |||||||| | | || | |
Sbjct 21840382 GAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAG----TCTTCTTAGAACT 21840327
Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094
|| ||||||||| | | | ||| | | | || || ||||| || |||| |||
Sbjct 21840326 AAGCTTGATGAAGAACGTTTGAAATCGATAGTTTGTGATGCGGTTGAGATTGAGAGAGAG 21840267
Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154
||| || || || | ||||| ||| |||| |||||| ||| | |||| ||
Sbjct 21840266 TTTGTTTGCGATGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGAGTTGATGAGTCAG 21840207
Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214
|||||||| || ||||||||| | ||| | | ||||| | | ||| | |||
Sbjct 21840206 TACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGT 21840147
Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274
|| || | | |||||||| | ||||||||| |||||||||| ||||| ||
Sbjct 21840146 GTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTT 21840087
Query 132275 GA 132276
||
Sbjct 21840086 GA 21840085
>seq5
Length=21221946
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/122 (79%), Gaps = 4/122 (3%)
Strand=Plus/Minus
Query 131869 TTTTG--CTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCT 131925
||||| |||||||||||||||| ||||| || || ||||| ||| | ||||| |||||
Sbjct 3397190 TTTTGACCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTT-TGTTCAATCTTCTGGCT 3397132
Query 131926 TAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985
||||| || ||| | ||||||||||| |||| ||||| |||| ||||| | || ||
Sbjct 3397131 AAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGA 3397072
Query 131986 AG 131987
||
Sbjct 3397071 AG 3397070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186802216596856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |