Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7 170 5e-37 seq5 93.3 1e-13 >seq7 Length=24649197 Score = 170 bits (188), Expect = 5e-37 Identities = 331/482 (69%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859 || ||||||||||||||||| |||||||| | | ||| | | || || || || Sbjct 21840557 AAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GAT--CTCAAAGCTTCGCTGAGAG 21840502 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918 | | |||||||||||||| ||||||||||||||||| || ||| ||||| ||| | || | Sbjct 21840501 AATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTT-TGTTCGATAT 21840443 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||| | ||||| || || || |||||||||||| |||| || || |||| || |||| Sbjct 21840442 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGA 21840383 Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----T 132034 |||| |||| | || ||| || ||| || |||||||| | | || | | Sbjct 21840382 GAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAG----TCTTCTTAGAACT 21840327 Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094 || ||||||||| | | | ||| | | | || || ||||| || |||| ||| Sbjct 21840326 AAGCTTGATGAAGAACGTTTGAAATCGATAGTTTGTGATGCGGTTGAGATTGAGAGAGAG 21840267 Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154 ||| || || || | ||||| ||| |||| |||||| ||| | |||| || Sbjct 21840266 TTTGTTTGCGATGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGAGTTGATGAGTCAG 21840207 Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214 |||||||| || ||||||||| | ||| | | ||||| | | ||| | ||| Sbjct 21840206 TACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGT 21840147 Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274 || || | | |||||||| | ||||||||| |||||||||| ||||| || Sbjct 21840146 GTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTT 21840087 Query 132275 GA 132276 || Sbjct 21840086 GA 21840085 >seq5 Length=21221946 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/122 (79%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 131869 TTTTG--CTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCT 131925 ||||| |||||||||||||||| ||||| || || ||||| ||| | ||||| ||||| Sbjct 3397190 TTTTGACCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTT-TGTTCAATCTTCTGGCT 3397132 Query 131926 TAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985 ||||| || ||| | ||||||||||| |||| ||||| |||| ||||| | || || Sbjct 3397131 AAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGA 3397072 Query 131986 AG 131987 || Sbjct 3397071 AG 3397070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802216596856